Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04176 ATGGGTAAATCACCTGGAAAATGGATCAAAACTGTACTGTTTGGGAAGAAATCATCCAAATCAAATATACCAAGAGGAAGAGAGAAGCTTGTTAATCAAAAGGAAGGAGTTGTTGCTTCCAAGGTTTCAGAAACTGGTTTAGCTTTAGAGCCAACCACCAATACTATTCCCAGACACGAGGAAGACTTGGAGCTGGAGAACAAAGAAGCAGAAAATGTTTTGCCTGGGAATCAAGAAATTGACACAGTGGAACCTGTTAATCAAGATGCACCAATTGATCCAGAGACATTGAAGCTGGAGGAAGCAGCCACGAAAGCTCAGGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCTTTTAGGGCCCTAAAAGGCATAATAAGGTTACAAGCACTTATTCGCGGACACTTGGTTAGAAGACAAGCTGTTGTTACATTATGCTGTATGTATGGAATTGTCAAACTACAAGCACTTGGTCGTGGACAAAGTGTTAGAAAGTCTGATGTCGGATTTGAAATTCAAGAGAAGTGCATTCTATTGAAGTTTCAGGATGACAAACCTGGCAAACCAATTACCGTATCTGGTAAAATTATGAAGCTGTCAGCTAACACTTTCATTCGTAAGCTTATTACTTCATCAACTACAATAATGGCCCTGCGTTTGCAATATGTTCCTGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGTTGGTCAGCATCTTGGTTTTGGAAGCCAATTCCTCAACCGAAGAAAATTCGGGATACTAAGCCTCAGAAAAGGCATGGTAATATTTCAACTGGAGATGCTCAAACGAGCAAGTCAAAACGTACCCACAGGAAACTTCCTACTGCAAATCCTGACCTAGCCCCATCACAAGCAAATCCTGAAATTGAAAAACCAAAACGAAATATAAGGAAATATCCAAGCCAACCCTCGGATCCTGTGCTGGAAAATCCCCAGATTGAGCTTGAGAAGGTTAAACGTAACTTGAGAAAGGTTCATAACCCAGTTGTTGAGACTGCAATTCTGTCAGAAGTTGAATCTGAGACTCTAAAGCCGAATGTGGAAAAGGAAACGGTTGCCTCCGGTGTTGATGTTTCAGTACCTGCGGTCATTAGTTCTAATGGGAAGATTAAGAAGGAAGCAACACTAACCATTTCCAGGGAGCCAGATATTGGAATTACTCATGGAGATTTGATTACTAAGGAGGTGTTTGACACTCCAAGCAGTTATCAGGTCAATGCGGAATCAAAGCCCTTGACAGATATTACAAGCAAAGATAAAAACATTTCTGACGATGAAGTGAAAAATGATCCCATAGATTTAGTAGAGACTATTGGCAAAGATGAAAATTCTAACTTAACAAATGGAGGTTTGAGTCACAAGGAAGATCAAACGGGCAGTGAAAATCAGAAACCAACCCGAAAAGCCTCAATTGTAGCTAAGCAGGAACGTGCAGAGAATGGTTTGCACAATAGTCCGACAATACCAAGTTATATGGCAGCAACTGAATCTGCAAAGGCAAAATTGAGGGCTCAAGGATCCCCAAAAGTTGGACAAGATGGAAGTGAGAAAAACAACAATGCTCGGCGACAGTCTCTGCCATCTTCAACTAACAGCAAAATCAGTTCTCATTCACCTAAAATACAGAGACCAACTCAGTCAGGTGGTAAGGTGGGCCACAAAAGTGACAAAGCTGTATCATCTTCTAGAGATGGAAATGCGAAGGTAGTTCAAGCAGAATGGAAGAGGTGA 1755 0.416 MGKSPGKWIKTVLFGKKSSKSNIPRGREKLVNQKEGVVASKVSETGLALEPTTNTIPRHEEDLELENKEAENVLPGNQEIDTVEPVNQDAPIDPETLKLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKLQALGRGQSVRKSDVGFEIQEKCILLKFQDDKPGKPITVSGKIMKLSANTFIRKLITSSTTIMALRLQYVPGDPNSVLSWLERWSASWFWKPIPQPKKIRDTKPQKRHGNISTGDAQTSKSKRTHRKLPTANPDLAPSQANPEIEKPKRNIRKYPSQPSDPVLENPQIELEKVKRNLRKVHNPVVETAILSEVESETLKPNVEKETVASGVDVSVPAVISSNGKIKKEATLTISREPDIGITHGDLITKEVFDTPSSYQVNAESKPLTDITSKDKNISDDEVKNDPIDLVETIGKDENSNLTNGGLSHKEDQTGSENQKPTRKASIVAKQERAENGLHNSPTIPSYMAATESAKAKLRAQGSPKVGQDGSEKNNNARRQSLPSSTNSKISSHSPKIQRPTQSGGKVGHKSDKAVSSSRDGNAKVVQAEWKR 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04176 584 MobiDBLite consensus disorder prediction 519 557 - -
Trre15g04176 584 PANTHER IQ-DOMAIN 5-RELATED 1 543 - -
Trre15g04176 584 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Trre15g04176 584 Pfam Protein of unknown function (DUF4005) 483 563 IPR025064 -
Trre15g04176 584 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Trre15g04176 584 MobiDBLite consensus disorder prediction 412 584 - -
Trre15g04176 584 MobiDBLite consensus disorder prediction 248 316 - -
Trre15g04176 584 SMART iq_5 98 120 IPR000048 GO:0005515
Trre15g04176 584 SMART iq_5 121 142 IPR000048 GO:0005515
Trre15g04176 584 MobiDBLite consensus disorder prediction 448 464 - -
Trre15g04176 584 MobiDBLite consensus disorder prediction 421 445 - -
Trre15g04176 584 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Trre15g04176 584 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Trre15g04176 584 Gene3D - 96 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04176 Trre-Chr15 52365253 52368654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04176 1 584 IQD Protein Family AT1G74690 44.318 1.69e-129 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04176 - - gmx:100807118 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02593 9 31474829 31480255 Trre15g04176 15 52365253 52368654 ECH
Trre15g04176 15 52365253 52368654 Trre15g04176 15 52365253 52368654 ECH
Trre9g02593 9 31474829 31480255 Trre15g04176 15 52365253 52368654 PCT