Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04173 ATGGAGTGCTCTTCTGGGAGATCTGGTGATGGAGATAGTGGACCTAAGGAAGATAAGAGAAGTGAGCATAGTATTGGTGATGATCATGAAGATAATAAAAAGGAGACTATTGTTGAGGAACCACCCATTGCTAATGCTGAAAGATCAATGGTGGAGGCAGAACCAATAGCATACTCTGCCAAAAATGATAAGGTTGTTGATGATCAACTTGAGACAACAAAAGCCCAAATGGGTGAAGTGAGGGAAGAAAATCAACGGTTAAAGATGTGTCTCAACAAAATAATGACTGAATACCGGGCACTAGAAATTCAATTTCAAAATATGGTTAAGCAAGAAACAAAGAAGAACAATGTTGATCAAAATGATAATAACAATGAAGAAATAATGGCAGAATCTGATCTTGTTTCTCTCAGCCTTGGAAGAGTTCCTAGTAACAATGTTCCAAAAAATGAAGACAAAGTTAACAAAGTCTCTAAACTAGCATTGAATAATGAAGATGAAGAATTTAAGGAAGAATTGGCTCTTGGATTGGATTGTAAATTTGAAACATCAAAATCAGGTAGCACTACTGAAGGATTACCAAATGTTCCAAGTCCTGTGAATAGTTCTGAAGTAGTTCCAATAAAGGATGATGAAGTTGTGGAAACTTGGCCACCAAGTAAGGCAGTTAATAATAAGACAGCTAGAGATACTGAGGATGAAGTTGCTCAACAAACTCCTGCCAAGAAAGCTAGAGTTTGTGTTAGAGCGCGATGTGACACACCAACGATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAGATTGCGAAAGGAAATCCATGCCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGCCCGGTTAGAAAACAGGTACAAAGATGTGTTGAAGACATGTCAATTTTAATCACAACCTATGAAGGAACACACAACCACAACCTCCCTCTTTCAGCAACAGCTATGGCATCCACGACATCCGCGGCCGCGTCCATGCTATTATCAGGTTCATCAACCTCTCATTCAAGTTCAATCCCCTCAACACAAACCAACAACAATCTTCATGGCCTAAACTTTTACCTACCAGATGGTTCAAAATCAAACCAACTTTACCTATCCAACCCTGCACTATCATCTCAACATTCACATCCAACAATTACTCTTGACCTCACTTCAAATCCATCAAATTCTTCAACATCACCCTTTGTTAGATTCAATTCAAACTACAACAACAATAACCAATTACCAAGATACCCTTCTTCCACAAGTCTTAGCTTTAGTTCCCCTGAATCAAACCCAATGCATTGGAATAGCTTCCTCAATTATGCTACTACACAAAATCAACAACAATATAGTAACATTAATAGAAACAATAATAACCTCGGCACATTAAACTTTGGTAGACAACAAAATACAATGGAAAATATATACCAATCATACATGCAAAAAAACAACAATGTTTTACAAGATAACAGTACTATATCTGCAGCAACAAAAGCAATCACTGCTGATCCAAATTTTCAATCAGCTTTAGCTGCAGCACTTTCTTCACTTATTGGAAACAATACTAATAATAATCAAGGGAATCAAAATAACCAAAGTGGAGGAGAAAATTTGAGTCAGAAAATGAAATGGGCTGAGATGTTTCCTGTTTCTGCTAGCTCATTGCCTTCAAGTTCTAAAGTTCATGGTTGTGCTTCAAGTTTCTTGAACAAGACGGCGCCGACGAATGCACAGACAGGAAGTTTGATGTTACTGTCTCCTTCTTTGCCATTTTCTACAACCAAAAGTGCTTCTGCATCTCCCGGTGGTGGTGATAATAGTGACAACACCAATTAA 1845 0.381 MECSSGRSGDGDSGPKEDKRSEHSIGDDHEDNKKETIVEEPPIANAERSMVEAEPIAYSAKNDKVVDDQLETTKAQMGEVREENQRLKMCLNKIMTEYRALEIQFQNMVKQETKKNNVDQNDNNNEEIMAESDLVSLSLGRVPSNNVPKNEDKVNKVSKLALNNEDEEFKEELALGLDCKFETSKSGSTTEGLPNVPSPVNSSEVVPIKDDEVVETWPPSKAVNNKTARDTEDEVAQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVEDMSILITTYEGTHNHNLPLSATAMASTTSAAASMLLSGSSTSHSSSIPSTQTNNNLHGLNFYLPDGSKSNQLYLSNPALSSQHSHPTITLDLTSNPSNSSTSPFVRFNSNYNNNNQLPRYPSSTSLSFSSPESNPMHWNSFLNYATTQNQQQYSNINRNNNNLGTLNFGRQQNTMENIYQSYMQKNNNVLQDNSTISAATKAITADPNFQSALAAALSSLIGNNTNNNQGNQNNQSGGENLSQKMKWAEMFPVSASSLPSSSKVHGCASSFLNKTAPTNAQTGSLMLLSPSLPFSTTKSASASPGGGDNSDNTN 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04173 614 MobiDBLite consensus disorder prediction 11 41 - -
Trre15g04173 614 Gene3D WRKY domain 241 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g04173 614 MobiDBLite consensus disorder prediction 1 49 - -
Trre15g04173 614 Pfam WRKY DNA -binding domain 258 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g04173 614 SUPERFAMILY WRKY DNA-binding domain 250 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g04173 614 MobiDBLite consensus disorder prediction 593 614 - -
Trre15g04173 614 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 37 533 IPR044810 GO:0003700
Trre15g04173 614 SMART WRKY_cls 257 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g04173 614 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g04173 614 FunFam probable WRKY transcription factor 31 242 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04173 Trre-Chr15 52342572 52347517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04173 77 524 WRKY Transcription Factor Family AT5G15130 42.949 1.48e-86 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g04173 WRKY 1.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04173 - - pvu:PHAVU_003G192000g 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00145 13 1128987 1132081 Trre15g04173 15 52342572 52347517 ECH
Trre15g04173 15 52342572 52347517 Trre15g04173 15 52342572 52347517 ECH