Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04172 ATGTTCAACCATTTCCTTACCAGAGCTTCAAGGGTTTCATCTCTTACTAAACACAATGTTCTTCCCGCTTTCAATTTTTCCAGGTCTGTCCATTCAATACCACTTGCCACAGTAGAAGCAGAAGAGATATCTGGTGCAAGGCCTGCTGAAGTTTTGAACTTGGTACAGGGTAAATGGATTGGATCATCAAACTGGAATACAGTTGTGGATCCTTTAAATGGGGAGCCATTTATTAAAGTTGCTGAAGTTGATGAAGCTGGCGTTCAGCCTTTTGTTGATAGCTTGACCAGCTGTCCCAAACATGGTTTGCACAATCCTTTTAAGGCACCAGAGAGATATCTTATGTATGGAGACATATCTGCTAAGGCGGCTCACATGCTCTCACTTCCTAAGGTTTCAGATTTCTTTGTAAAGCTAATACAGAGAGTTTCTCCAAAGAGTTATCAGCAGGCTTTTGCAGAAGTTTATGTGACACAAAAGTTTCTAGAGAACTTCTGCGGAGATCAGGTTCGTTTCTTGGCTAGGTCTTTTGCAGTACCTGGAAATCATCTTGGGCAGCAAAGTCATGGTTTCCGTTGGCCATATGGTCCGGTGGCAATTATTACTCCTTTTAATTTTCCCCTAGAGATTCCAGTCCTTCAATTAATGGGTGCACTTTATATGGGCAACAAGCCAGTCCTTAAAGTCGATAGCAAGGTGAGCATTGTTATGGAACAAATGTTGCGCCTTCTTCATTCCTGTGGCTTACCTGTAGAAGATGTAGACTTCATAAATTGTGACGGAAAGACAATGAACAAGCTACTGCTAGAGGCAAATCCAAGAATGACCCTTTTCACTGGTAGTTCAAGAGTGGCAGAGAAGTTGGCTGTTGATTTGAAGGGACGCGTTAAATTAGAAGATGCTGGATTTGACTGGAAAATATTGGGCCCTGATGTCCATCAGGAAGATTACACTGCATGGGTATGTGACCAGGATGCATATGCATGCAGCGGTCAGAAGTGTTCAGCACAATCATTGTTATTTATGCACGAGAACTGGTCTAAGACTTCCTTGATATCTAAGTTGAAAGAACTTGCTGAGAGAAGAAAGCTAGCCGATTTGACAATTGGTCCAGTCCTTACTTTTACAACTGAATCATTGCTTGAGCACACAAAAAATTTACTTGAGATACCAGGATCAAAGCTGCTCTTTGGGGGTCAGCCTTTGGAGGACCATTCGATTCCGCAAGTTTATGGTGCTATTAAACCAACTGCAGTTTATGTTCCCCTAGAAGAAATTGTGAAGGATAAGAATTATGACCTTGTGACAAAAGAAATATTTGGACCTTTCCAGGTTATTACTGACTACAAAAGCAGTCAACTACCGATTGTGTTGGAGATTTTGGAAAAAATGCATGCACACCTAACTGCCGCTGTAGTTTCAAATGATCCTTTATTTTTACAGGAAGTGATTGGGAAATCGGTAAATGGCACAACTTATGCAGGTCTAAGAGCAAGAACAACTGGAGCACCACAAAACCACTGGTTTGGACCAGCCGGCGACCCCAGGGGTGCAGGAATCGGAACACCAGAGGCTATAAAACTTGTATGGTCTTGCCACAGAGAAATAATTTATGATTATGGACCAGTATCAAAGGATTGGGAAATTCCTCCTTCAACATGA 1662 0.4194 MFNHFLTRASRVSSLTKHNVLPAFNFSRSVHSIPLATVEAEEISGARPAEVLNLVQGKWIGSSNWNTVVDPLNGEPFIKVAEVDEAGVQPFVDSLTSCPKHGLHNPFKAPERYLMYGDISAKAAHMLSLPKVSDFFVKLIQRVSPKSYQQAFAEVYVTQKFLENFCGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMEQMLRLLHSCGLPVEDVDFINCDGKTMNKLLLEANPRMTLFTGSSRVAEKLAVDLKGRVKLEDAGFDWKILGPDVHQEDYTAWVCDQDAYACSGQKCSAQSLLFMHENWSKTSLISKLKELAERRKLADLTIGPVLTFTTESLLEHTKNLLEIPGSKLLFGGQPLEDHSIPQVYGAIKPTAVYVPLEEIVKDKNYDLVTKEIFGPFQVITDYKSSQLPIVLEILEKMHAHLTAAVVSNDPLFLQEVIGKSVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDYGPVSKDWEIPPST 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04172 553 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 327 338 IPR016160 GO:0016491
Trre15g04172 553 Pfam Aldehyde dehydrogenase family 66 494 IPR015590 GO:0016491
Trre15g04172 553 CDD ALDH_F12_P5CDH 53 541 - -
Trre15g04172 553 FunFam Aldehyde dehydrogenase 12 310 498 - -
Trre15g04172 553 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 29 553 IPR044638 GO:0004029
Trre15g04172 553 FunFam probable aldehyde dehydrogenase 44 302 - -
Trre15g04172 553 SUPERFAMILY ALDH-like 53 520 IPR016161 GO:0016491
Trre15g04172 553 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620
Trre15g04172 553 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 45 304 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04172 Trre-Chr15 52295051 52302229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04172 1 553 Aldehyde Dehydrogenase Gene Family AT5G62530 80.755 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04172 K00294 - gmx:100806579 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04172 15 52295051 52302229 Trre15g04172 15 52295051 52302229 ECH