Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04168 ATGTCAATTCAACATTACCCACAATTTCATCGGATAATATTGCAAGATAAGAAGCTTAGGATTCCCAAGAAATATGTGGAGAAATTTTGGAAAGGAATATCAAACCCAATATTCCTTAGATTCCCAAATGGTGTTCAACAAAAAATATTTTGGGTGAAGGACAATGGTGATATTTTGTTTCAAAAAAATTGGAACCAATTTGCAAAGTCTCTCAAATATGGAAATCTCTTAACTTTTAAATACAAAGGTGGATCATGTTTCAAGGTTAAGATATTTTGTGTCAATGCTTTAGAAATCAACTATTCCAATATAAAATCCATAGTGGATGAAGAAGAAGTTGTTGAAGCTGCAGAAGAAGAAGCTAAAGAAACTATTGAAGTGAGTGATGAGAGTGAAATACCAATGCAAGCTCAAAGGACTGGAAATGGCAAGAGAAAAATTAACATGGATTTAGATTCTACCCAACAAAAATTATCAGGTAGTAGCAGCATGGTGAAGAAGGCTAAAAAATGCTCAACAACAGCTGAAGCTGTTAATATGAGAGACACTAATGAGAATAATCCCTTTTTTGATATTATAATGACAAAAACTTATGCTGATGGCAAATACGTGAAAATACCAATGGAGTTTTCAAGAGAACACTTGAACAATTTTCAAGGAATTGCAACCCTATTTGTTGGTGAGAAAATGGCTATGGAAGTGAACTTGAGGTTTGATCAGAACAAAAAAAGATCTATTATATGTGCCGGTTGGAAGTTATTTAGCCAAAAATATAACTTGCAAATTGGCGATGCTTGTAAGTTTGTGATGACTCAACGCGAACCGCTTTTATTCACGATTATTATTAATCGAGCTAGAAAGGAACCAAATCCTAAGATGTTGCAAGGTTATAAAGAAGGGATCTCTAGTGATACTAATGTTGTAAAGAGGGAAGACACAGGAGGAATTTCTAGTAGCTGTCCAAAAGTACATTTTTTTTATGGTAAAAACATAGAAGGCATGGTGAAAAAGGCTAACAAATGCTCAACAATTGCTGCAACTGTTAATATGATAGACAATAATCAGAATCCCTTTTTTGAAGTTATATTGACAAAATCTTATGCTGATGGCACAGTCTTGAGAATACCAAGTGAGTTTTCAAGAGAACACTTGAACAATTTTCAAGGAATTGCAACCCTATTTGTTGGTGAGGAAATGGCTATGGAAGTGAACATGAGGTTTGATCATTGCCATAAAGCATCTTATATCTATGGTCGTTGGAAGTTATTTAGCCAAAAATATAACTTGCAAGTTGGTGATGCTTGTAAGTTTGTGATGACTCAACGTGAACCGCTTTTATTCACTATTATTATTAATCGAGCTAGAAAGGAACCAAATTCTAAGATGTTGCAAGGTTATAAAGAAGAGATCTCTAGTGATAATAATCTTGTAATAAAGAGGGAAGACACCGGAGGAAATTCTAGTAGCTGTCCAAAAGTACATTTTTTTTATGGAGGTCGTGATGTGAATACATTCAAGGTTTTGGTGAATGTCAAAAAGCCGATTGTACCAAAGGAGTTTAGGAAAAGAGGATGTTGTCATAATTATGTGGTGTTGAAAATGGGGGGACAATCGTGGTCGGTAAAAGTAAATTCTTATGGTAGTACTAAATGCTGTAAGTTTGGTAAAGGTTGGAGACAATTTATGCAAGAATGCAAAATAGAGATTGGAGATACTTGTCTCTTTAAGTTGATTGATGAGAAAAAATTAGTGTTTGAAGTTTCAATTGTAGGAAAAAATCATTGA 1785 0.3401 MSIQHYPQFHRIILQDKKLRIPKKYVEKFWKGISNPIFLRFPNGVQQKIFWVKDNGDILFQKNWNQFAKSLKYGNLLTFKYKGGSCFKVKIFCVNALEINYSNIKSIVDEEEVVEAAEEEAKETIEVSDESEIPMQAQRTGNGKRKINMDLDSTQQKLSGSSSMVKKAKKCSTTAEAVNMRDTNENNPFFDIIMTKTYADGKYVKIPMEFSREHLNNFQGIATLFVGEKMAMEVNLRFDQNKKRSIICAGWKLFSQKYNLQIGDACKFVMTQREPLLFTIIINRARKEPNPKMLQGYKEGISSDTNVVKREDTGGISSSCPKVHFFYGKNIEGMVKKANKCSTIAATVNMIDNNQNPFFEVILTKSYADGTVLRIPSEFSREHLNNFQGIATLFVGEEMAMEVNMRFDHCHKASYIYGRWKLFSQKYNLQVGDACKFVMTQREPLLFTIIINRARKEPNSKMLQGYKEEISSDNNLVIKREDTGGNSSSCPKVHFFYGGRDVNTFKVLVNVKKPIVPKEFRKRGCCHNYVVLKMGGQSWSVKVNSYGSTKCCKFGKGWRQFMQECKIEIGDTCLFKLIDEKKLVFEVSIVGKNH 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04168 594 ProSiteProfiles B3 DNA-binding domain profile. 530 593 IPR003340 GO:0003677
Trre15g04168 594 SUPERFAMILY DNA-binding pseudobarrel domain 6 95 IPR015300 -
Trre15g04168 594 SUPERFAMILY DNA-binding pseudobarrel domain 516 587 IPR015300 -
Trre15g04168 594 Pfam B3 DNA binding domain 530 589 IPR003340 GO:0003677
Trre15g04168 594 ProSiteProfiles B3 DNA-binding domain profile. 358 455 IPR003340 GO:0003677
Trre15g04168 594 CDD B3_DNA 188 284 IPR003340 GO:0003677
Trre15g04168 594 Gene3D - 1 95 IPR015300 -
Trre15g04168 594 Coils Coil 107 127 - -
Trre15g04168 594 PANTHER B3 DOMAIN-CONTAINING 189 441 - -
Trre15g04168 594 ProSiteProfiles B3 DNA-binding domain profile. 189 286 IPR003340 GO:0003677
Trre15g04168 594 SUPERFAMILY DNA-binding pseudobarrel domain 184 282 IPR015300 -
Trre15g04168 594 CDD B3_DNA 505 589 IPR003340 GO:0003677
Trre15g04168 594 SUPERFAMILY DNA-binding pseudobarrel domain 353 451 IPR015300 -
Trre15g04168 594 CDD B3_DNA 357 453 IPR003340 GO:0003677
Trre15g04168 594 CDD B3_DNA 13 93 IPR003340 GO:0003677
Trre15g04168 594 Gene3D - 165 287 IPR015300 -
Trre15g04168 594 Gene3D - 498 593 IPR015300 -
Trre15g04168 594 Gene3D - 336 456 IPR015300 -
Trre15g04168 594 SMART B3_2 359 453 IPR003340 GO:0003677
Trre15g04168 594 SMART B3_2 190 284 IPR003340 GO:0003677
Trre15g04168 594 SMART B3_2 9 95 IPR003340 GO:0003677
Trre15g04168 594 SMART B3_2 504 593 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04168 Trre-Chr15 52270617 52276317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04168 7 284 B3 DNA Binding Superfamily AT3G18990 27.003 2.61e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g04168 B3 8.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04168 - - mtr:120578011 494.967