Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04154 ATGTTTCACAATCAACAACAACGTCCAAACAACACTTCTCAACAACCTCTTGATTCTCTTTTCCTTTCTTCTTCTTCTTCTGTTCCTTTTTTCGGTTCAAGATCTATGGTGAGTTTTGAAGATGTTCAAGGAGGGAAAAGGTGCAATAGGTCTTTCTTCACCGGATTTGACCTCGATGAAAATGGAGACGATGAGATGGATGAGTACTTTCATCAATCGGAGAAGAAGCGGCGTCTATCGGTGGATCAAGTTCAATTTCTTGAGAAAAGCTTTGAAGTTGAGAACAAGCTAGAACCAGATAGGAAAATCAAGATAGCCAAAGACCTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTTCAAAACCGCCGTGCAAGGTGGAAGACCAAACAGCTTGAGAAGGATTATGAAACTCTTAATGATAGCTTTGAGTCTCTTAAGACTGATTATGACAACATCCTCAAGGAGAAAGAGAGGTTACAAGCTGAGGTGGCAAGCCTAACTGAAAAGGTACTTGCAAAAGAGAAACAAGAGGGAAAATTAAAAAATGGTGAATGTGAAACAAAAGAATTACTGCAGAAATCACTAATGAATTCAGTTTCTGAGGGTGAAGGATCCAAATTGTCAATTGTTGAGGCTTCTAATAATAATAATAATAATAAACTTGAAGATATTAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGCCCACGTTACACGGATGGAGTGTTGGAGACATGTGATTCATCCTATGTGTTTGAACATGAATATCAATCGGATCTATCACAAGATGAAGAAGACAATTTATTGCCTCCTTATAACATCTTTACAAAACTTGAAGATGTTAATTACTCCGACCCGCCACACGGTTCGTCTACTTTTGGATTTCAAGAGGAAGATCATCATACTCTTTGGCCGTGGTCTAACTACTAG 936 0.3889 MFHNQQQRPNNTSQQPLDSLFLSSSSSVPFFGSRSMVSFEDVQGGKRCNRSFFTGFDLDENGDDEMDEYFHQSEKKRRLSVDQVQFLEKSFEVENKLEPDRKIKIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYETLNDSFESLKTDYDNILKEKERLQAEVASLTEKVLAKEKQEGKLKNGECETKELLQKSLMNSVSEGEGSKLSIVEASNNNNNNKLEDISSARSDILDCDSPRYTDGVLETCDSSYVFEHEYQSDLSQDEEDNLLPPYNIFTKLEDVNYSDPPHGSSTFGFQEEDHHTLWPWSNY 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04154 311 Pfam Homeobox associated leucine zipper 130 171 IPR003106 GO:0006355|GO:0043565
Trre15g04154 311 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Trre15g04154 311 Pfam Homeodomain 75 128 IPR001356 GO:0003677
Trre15g04154 311 Gene3D - 69 143 - -
Trre15g04154 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 216 IPR045224 GO:0003700
Trre15g04154 311 CDD homeodomain 75 131 IPR001356 GO:0003677
Trre15g04154 311 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Trre15g04154 311 FunFam Homeobox-leucine zipper protein HAT5 68 132 - -
Trre15g04154 311 Coils Coil 129 194 - -
Trre15g04154 311 SMART HOX_1 73 134 IPR001356 GO:0003677
Trre15g04154 311 PRINTS Lambda-repressor HTH signature 110 126 IPR000047 GO:0003677
Trre15g04154 311 PRINTS Lambda-repressor HTH signature 101 110 IPR000047 GO:0003677
Trre15g04154 311 SUPERFAMILY Homeodomain-like 61 132 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04154 Trre-Chr15 52161165 52162826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04154 32 269 Homeobox Transcription Factor Family AT3G01470 39.496 3.66e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g04154 Homeodomain 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04154 - - mtr:11437653 483.411