Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04153 ATGGCTGGTGGTAGAGTTTTTACAAATGGTCCTGCAAATAATAGTTCAAATATGAATATGAACATGTTTCACAATCAACAACAACGTCCAAACAACACTTCTCAACAACCTCTTGATTCTCTTTTCCTTTCTTCTTCTTCTTCTGTTCCTTTTTTCGGTTCAAGATCTATGGTGAGTTTTGAAGATGTTCAAGGAGGGAAAAGGTGCAATAGGTCTTTCTTCACCGGATTTGACCTCGATGAAAATGGAGACGATGAGATGGATGAGTACTTTCATCAATCGGAGAAGAAGCGGCGTCTATCGGTGGATCAAGTTCAATTTCTTGAGAAAAGCTTTGAAGTTGAGAACAAGCTAGAACCAGATAGGAAAATCAAGATAGCCAAAGACCTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTTCAAAACCGCCGTGCAAGGTGGAAGACCAAACAGCTTGAGAAGGATTATGAAACTCTTAATGATAGCTTTGAGTCTCTTAAGACTGATTATGACAACATCCTCAAGGAGAAAGAGAGGTTACAAGCTGAGGTGGCAAGCCTAACTGAAAAGGTACTTGCAAAAGAGAAACAAGAGGGAAAATTAAAAAATGGTGAATGTGAAACAAAAGAATTACTGCAGAAATCACTAATGAATTCAGTTTCTGAGGGTGAAGGATCCAAATTGTCAATTGTTGAGGCTTCTAATAATAATAATAATAATAAACTTGAAGATATTAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGCCCACGTTACACGGATGGAGTGTTGGAGACATGTGATTCATCCTATGTGTTTGAACATGAATATCAATCGGATCTATCACAAGATGAAGAAGACAATTTATTGCCTCCTTATAACATCTTTACAAAACTTGAAGATGTTAATTACTCCGACCCGCCACACGGTTCGTCTACTTTTGGATTTCAAGAGGAAGATCATCATACTCTTTGGCCGTGGTCTAACTACTAG 999 0.3854 MAGGRVFTNGPANNSSNMNMNMFHNQQQRPNNTSQQPLDSLFLSSSSSVPFFGSRSMVSFEDVQGGKRCNRSFFTGFDLDENGDDEMDEYFHQSEKKRRLSVDQVQFLEKSFEVENKLEPDRKIKIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYETLNDSFESLKTDYDNILKEKERLQAEVASLTEKVLAKEKQEGKLKNGECETKELLQKSLMNSVSEGEGSKLSIVEASNNNNNNKLEDISSARSDILDCDSPRYTDGVLETCDSSYVFEHEYQSDLSQDEEDNLLPPYNIFTKLEDVNYSDPPHGSSTFGFQEEDHHTLWPWSNY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04153 332 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 72 237 IPR045224 GO:0003700
Trre15g04153 332 CDD homeodomain 96 152 IPR001356 GO:0003677
Trre15g04153 332 Coils Coil 150 215 - -
Trre15g04153 332 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677
Trre15g04153 332 Gene3D - 79 156 - -
Trre15g04153 332 SUPERFAMILY Homeodomain-like 83 153 IPR009057 -
Trre15g04153 332 MobiDBLite consensus disorder prediction 8 38 - -
Trre15g04153 332 FunFam Homeobox-leucine zipper protein HAT5 89 153 - -
Trre15g04153 332 PRINTS Lambda-repressor HTH signature 131 147 IPR000047 GO:0003677
Trre15g04153 332 PRINTS Lambda-repressor HTH signature 122 131 IPR000047 GO:0003677
Trre15g04153 332 SMART HOX_1 94 155 IPR001356 GO:0003677
Trre15g04153 332 MobiDBLite consensus disorder prediction 1 38 - -
Trre15g04153 332 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981|GO:0006355
Trre15g04153 332 Pfam Homeodomain 96 149 IPR001356 GO:0003677
Trre15g04153 332 Pfam Homeobox associated leucine zipper 151 192 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04153 Trre-Chr15 52161165 52162889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04153 53 273 Homeobox Transcription Factor Family AT3G01470 41.176 4.67e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g04153 Homeodomain 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04153 - - mtr:11437653 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04153 15 52161165 52162889 Trre15g04153 15 52161165 52162889 ECH