Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04150 ATGGGTAAGATGTTTGATATGCTAGCCAATGTCAGTCCTGATAGAGAATCATGGCGGTTTAATGTTCGTGTTGTAAGGTTATGGACTGTATACTCTACAACGAAACCTGGGCACTTGGACTCTCTGGAAATGATTTTAGTTGATGACAAGGGAACTAAGATTCATGCATCTATTGCTCACAAGTTGCTGTATTTGTTTCGCCACCAACTCTTTGAAGGAGATGTGTATTTGATGTCAAATTTTACAGTTGTACCAGAAGCTGGTCTTAATCGTACTACTACTCATCCTTATCAACTTCATTTTATCTACAAGACTAAAGTGTCAAGATGTCAAGATTGTTCAATTGAAAAATTTGGATTGTCGTTAACAACAATTGCTAATCTTTGTAGTTATAGTGCTAATCATGCATTTTTAGTTGATATTGCTGGATTAGTTATGCGTATATCTTCAGAGAGGCAATGTGTCTCTAATGGAAAAACTACGAAAGAGATTGTGCTTCACATGTTTGATAATAGTGGTAATTGTCAATGTGTATTGCCTGGAGCATATGTCGATCAATTTCAAAGCTTGGTTGATAGAGGCGGTGGTGGCCTTCCTATTATAGTGATTCAATTTGCAAAAATTCGATCTGAAGAAGGGAAAATTTCCATTGAAAGTTTCTTGAATATTACTAGGATTTTGCTGGATCCTTTTACACCAGAAATTGTTGCTTTCAAGAAAAGGTAG 726 0.3609 MGKMFDMLANVSPDRESWRFNVRVVRLWTVYSTTKPGHLDSLEMILVDDKGTKIHASIAHKLLYLFRHQLFEGDVYLMSNFTVVPEAGLNRTTTHPYQLHFIYKTKVSRCQDCSIEKFGLSLTTIANLCSYSANHAFLVDIAGLVMRISSERQCVSNGKTTKEIVLHMFDNSGNCQCVLPGAYVDQFQSLVDRGGGGLPIIVIQFAKIRSEEGKISIESFLNITRILLDPFTPEIVAFKKR 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04150 241 Gene3D - 4 110 IPR012340 -
Trre15g04150 241 SUPERFAMILY Nucleic acid-binding proteins 120 240 IPR012340 -
Trre15g04150 241 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Trre15g04150 241 Gene3D - 114 241 IPR012340 -
Trre15g04150 241 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
Trre15g04150 241 CDD RPA1_DBD_A_like 22 107 - -
Trre15g04150 241 CDD RPA1_DBD_B_like 140 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04150 Trre-Chr15 52091235 52092365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04150 11 230 Core DNA Replication Machinery Family AT4G19130 22.707 9.60e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04150 - - tpra:123893724 249.21