Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04147 ATGGAGACGTATGCGATTCAACAGCTTAGACGCTACGATGCTCTTCTCTCAATCAATGCTTCAAATCTTGGCTCTGAGTTTAAAGTTAAGGTTATGAAAAAGTGGATTACGAAGGACGTCATTAGAATGGGGAAGATCGTTTCTGTTGATATGATTTTGGCTGATCAAACTGGTCACAAAATACAGGCTACTATTCCTGAAATGTTGTGTCCTATGTTTGACAAGAAGATTGTGGAGGGTAAAGTTTATTTAATGTCAAATTTCACCATTAAGACTAACATGGGTCAGCATTTGGCAAGTTTTCATAGAAATTTGTTGGTCTTTAATGATCGTACTGTTGTTCAAATGTCTTGGGGGTGTGGCTTTCCAACCCATGGACTTGATTTAATTGGATCTAAAGATGTTCTGAGTCTTAAGGATAAGTTTCAGTTTTTGGTTGATGTCATTGAGGTTATTACTTATATCAGGCATGATAAAAACATTTATCTTGATGGAACGACTACAAAGACTGTCACTTTGAAGCTCACAGATAACAAGAAATGTAGCAATACTTTTGAATGCGAATTATTTGGAGGATATGTTGAACTGTTTCGTCAGCTGATGGAGGAGAAGGGCTTGGGACTTCCTGTTGTTGCTTTGCAGTGGGTGAAGGTTACTAAAAATCAAGGAAGAAGTGTTGTTCAGAGTGTTGATGGAATTACCAAGATTTATATGAACCCTACTTTTTATGATGCACTCAAGTTTAGGAATGGATTGGTGATTGAACTTAATCGAAAGCCAAAAACTCATGGTTTTCCTCGCCGTGACAAACCTATTGCATTTAGTTTCACTACTCAGTACCATTGCAAGAGTATTTCACAGCTGATGGAAGATCCAACTCTTGGAATCTATTTGATTAATGGCCGTATAATGGATGTTGCTGCACTTGATACTTGGTGGTATCCGGTTTGTGGTTGTGATTTAATTATTGAAGACTATCTTGGGGATTTTTTTTGTGGAAAATGTCATGCAACTGATTTTGTACCAATGCTAAAGTATAGAGTTAAAATGGTAGTGGAAGATGAGTCTGCTACAACCTTTTTTGAGGCATTTGATCATGTTATGCTTCCAATTGCTGTAGTTGACCCTACTAGACAGGGTATAACTAGGACTTATTTCCCTCAAGCATTTGATCATGTCATTGGAAAGAGTATAATGTTTATTGTTGAGAAAAAAAAACATAATAAACAATATATTGATGGAATGTTTGAGTTGCTTTGTGTATCAGATGATAGGGAGATTATAAAATACTATGTTGACAAGGGTATTTGCTCTACTCCCTCTAAGGAAGTTGCTATAAATTTTGATAAAGACCGTAGTTTGATGAAACAGATAGCTTATGATCCTCCTCAAACTACAGTTACCAAATTGCTTGTTGAATATCTCAATCCTATTTCAGAAAACTCTCCTTATTTTCATGTTGGAGAGAGTTCCAATGCTGCTGCACCCAATTCTGATGATGATGATGATGATGATTTCAACCTGAGATCAGTGCGTCCTCGACTTGTTTGA 1551 0.3662 METYAIQQLRRYDALLSINASNLGSEFKVKVMKKWITKDVIRMGKIVSVDMILADQTGHKIQATIPEMLCPMFDKKIVEGKVYLMSNFTIKTNMGQHLASFHRNLLVFNDRTVVQMSWGCGFPTHGLDLIGSKDVLSLKDKFQFLVDVIEVITYIRHDKNIYLDGTTTKTVTLKLTDNKKCSNTFECELFGGYVELFRQLMEEKGLGLPVVALQWVKVTKNQGRSVVQSVDGITKIYMNPTFYDALKFRNGLVIELNRKPKTHGFPRRDKPIAFSFTTQYHCKSISQLMEDPTLGIYLINGRIMDVAALDTWWYPVCGCDLIIEDYLGDFFCGKCHATDFVPMLKYRVKMVVEDESATTFFEAFDHVMLPIAVVDPTRQGITRTYFPQAFDHVIGKSIMFIVEKKKHNKQYIDGMFELLCVSDDREIIKYYVDKGICSTPSKEVAINFDKDRSLMKQIAYDPPQTTVTKLLVEYLNPISENSPYFHVGESSNAAAPNSDDDDDDDFNLRSVRPRLV 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04147 516 SUPERFAMILY Nucleic acid-binding proteins 143 250 IPR012340 -
Trre15g04147 516 Gene3D - 121 254 IPR012340 -
Trre15g04147 516 Gene3D - 277 419 IPR012340 -
Trre15g04147 516 CDD RPA1_DBD_A_like 28 114 - -
Trre15g04147 516 Pfam Domain of unknown function DUF223 51 117 IPR003871 -
Trre15g04147 516 Gene3D - 12 116 IPR012340 -
Trre15g04147 516 MobiDBLite consensus disorder prediction 486 507 - -
Trre15g04147 516 SUPERFAMILY Nucleic acid-binding proteins 27 116 IPR012340 -
Trre15g04147 516 SUPERFAMILY Nucleic acid-binding proteins 281 409 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04147 Trre-Chr15 52062679 52065021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04147 10 365 Core DNA Replication Machinery Family AT5G08020 20.308 1.11e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04147 - - tpra:123922259 457.988