Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04125 ATGGGACACAAAAAGCGAAACTCTGTTCCACGTTCCAAACTATCGCCGGCGGCTTCTCCGGTGGCTCAATCCCCCATCGGCGGAGCCGCCAATGGTTCTACTTCACCCGAAGCCGATTCAATCATTGTTTTTGATCAAAATCTCACTAACCCTAGCAAGATCGAATTAGTTTCTCATCAATCTGAGGGTTCCGATTTCTCTGCAATTAAGGTAGAATGTGAGCGAGCCCTAACCACGTTTCGTCGTGGGAATCATAATAGGGCAATGAAGCTTATGAAGGAACTGTGCTTGAAAGAGGATGGTTCGCCTTACTCGGCTTTCATTTATCGAATTCATGGGTTTATATGTTTCAAAGTGGCTTCGATTATTACTGACTGTAGTTCGAAACAGAGGCATTTGAAGCATGCTGTTGAATCCGCGCGGAGAGCTGTTGAGCTTTCGCCGAATTCAATTGAGTATGCACATTTTCATGCCACTGTGATGTTGGAAGCAGCCACTGAGGGGAAGGATTATGAGGATGTGGTGCACGAGTGTGAGAGAGGGCTTGCTATTGAAAACCCAAATGATCCTGCTAAGGAGACATTGCAGGATGAGAGCGAGCAGAAAGTGTCTAGTTTGGAAGATCGGATTTTACATGTGCAGGCTGAGTTGAGGCAGCTGATTCAGAAGTCAAACATAGCTTCATTGTCGTCTTGGATGAAAAATCTGAGTAATGGGGAAGAGAGGTTTCGGTTGATTCCTATAAGGAGGGCTACGGAGGATCCTATGGAGGTTAGGTTGGTTCAGACTAGAAGGCCAAATGAGATTAAGAAGGTGACCAAGACTCCCGAGGAAAGAAGAAAAGAGATTGAAGTAAGGGTAGCTGCTGCAAGGCTGTTGCAGCAGCAGTCAGAGTCACCCCAGTCCCCGAATGAAGGAGATAGGGATGACAGAGCATTGGATGTGTCTTCAGGGTCGAGTCAGAGGATAGGTGAGAGGCGAAGGCATGTGAGAAACAATGGCTCTTCAGCCGAAAGGAGAAAGTGGGTGCTAACTTATTGGGATTCACTGAGTATGGATGTGAAGAAGGAGTGGCTTAGGATTAAAATATCTGATATCATGTCCCACTTTAGCTCTACAAAGGATACTTTACCGAAGGATGTTTTATCAGAAGCACTGTTTTATGCTGAAGCCAATAAAACATGGAAATTTTGGAATTGTGGCATTTGTGCTGAGAAATTTCCCAATCAGGAATTTCATAGGCAGCATGTTATGCATGTGCACCTTCAGACTCTCTCGCCAAAAATGCAGAGACTTTTGCCTCAACATGTCGACAATGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTTTGGATGTCTCAGCTGCAGTTAAAATGCTTGATTATAAAGCAAAACTGAAAGGTCCATCACTTCCAGAGGATTATCTTACTCAGGACTACAACGATTGTTTTAAAGATTCAAGCAGCTCTTACCATGAAAAGGAAAGTTTAGGGTACAGTATTGGTAATTGTACGACCGAAAGCAGTAAGTATTATAAAAATGCGGAAAGTGATGCCAAAGAAGGCGTTGAAGACCAACAGTTTATGGCAAATCCAGTTACTGATTGTTGGCCAGTATCTGATGACAAGGAGCGTGCAAAACTTCTGGAGAAAATCCATGGAGTATTTGAGATACTTATTAGACACAAATGTCTTGCTGCTAGTCATCTTCACAAAGTCATACAATTTAGTATGGGTGAGATCCAGGGTCTTGCTGCTGGTTCTGAACTTCTAAAACATGATGTAGACCAAACACCAATGTGTATATGCTTTCTGGGAGCTTCACAACTTAAGAAAATTCTCCAGTTTCTGCAGGAAATGTCTCATGCTTGTGGGTTGGGTAGATATTCTGATAAAAGTAGTAGTCCGAAGAATGATTTGCATGATATTAGTCAAGGTCCTGAAATTAAAGATAAAATTGTTCTTAATGGAGATGCATCATGCCTTCTCCTGGATGAGTGTCTACTGCCAACACAAGTCACTCCTGGTACAGCCCAGGAGGTTGTCTTCGATGACATGGTCACCCCAAGTTCTCCTGATGGAATTTCAGACAATAGTGGTGCTTGGTTGTCCTGGCTATATTCAAGTCGGCCTATTGGGGATCAGTTAACGTCATGGATTCGGACCAAAGAAGATAAAACATGTCAAGGACAAGAAATGGTCCGGACACTTGACAAGGAGTTTTATCAATTACATAGCCTGTGTCAGAAGAAGTCTGACCGTATAAGTTATGAGGAAGCACTACAGACAATAGAGGATCTTTGTCTTGAAGAAGGCAAGAAGAGGGAAAATGTAGGTGAATTTGTGCAGCGAAGCTATGAGTCTGTCTTAAAAAGGCGGAGAGAAGAGCTTGCTGAGAGTGAGAATGAAATGATGTATGCTGGCAATAGATTTGAGATGGATTGTATATCAAATGTTTTGCAAGAAGCAGAAGCGATGAATGTTAATCAATTTGGCTATGAGGAAACTTATACTGGTGTGACTTCTCAGTTATGTGACTTGGAATCCGGTGAAGATGATGAATGGAGAATGAAGGACTGCTTGCACCAAATGGATGGCTGTATAGAAATTGCTATTCAGAAACTGAAAGAGCACTCGTCTATAGAGATTAGCAAAGTCGATGCTGAAATAATTAAATGTGTTTCAGAGGTGCAGCAATTGGAACTCAAGCTTGGGCACGTTTCTGCCAATGATTATCGAGCAATAATAGTGCCTCTGGTGAAGTCGTACCTAAAGACACTTTTGGAAGATTTGGCTGAGAAAGATGCAAGGGAGAAATCTGATGCTGCAGGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGATTAGCAAAGGGGTAAATGAGAACACAAGACATGTGGAGAAGACAAAGGATAAGAAGAAGAATAAAGATCACAGGAAAACAAGAGATTTGAAGGCCACAAGTGGTTCTATGCATCCCTTGCTTCAGTCTACAACTCTTGATTCTGATCTGGTATCACCTGATAGTGACTTTCAAGATCATGAGGTTGTTTATATGAATGATGATGATTTGGAACACCACGAAGAGGAATTTAGACGTAAAATTGAGCTTGAAGAGGAGGAGAAAAAGCTTGAAGAAACCTTGGAACTTCAACGGAGGATTGAAAATGAGGCCAAACAGAAGCACCTTGCTGAGCAACAGAAGAAATTATCTGGTACTTGTGTTGAGGAAGTAACAGATAAACTTCAAGATTGTCAATTGAAGCCTGTTGCTGATGGTTCAGATGCACAAGAACATGGAAGACTACCTATGCAGGAACAGTTGGCAAAGGAGAATGGGTTCCCAAATAATCTGGATGTTGTGCTTATTACCACATCAAATGGTTCCATGATGCCGACTAAATCTTCAGCTGATTCAGATTCCCAAAAAATTAATCATTTGCAACAGTCAAAAGTTAAACAAGCAGATATACCCAATGGAATTGTTCCAGAGAATGGTCTACCTTTTCCTGATCGACGTGCAGGAAAAAAACATAAGCGGAATAAGAATTCGTCTAAAATGGTTGATGGAAAGTTGGAATATGTTTCATTGGAGAATGAGAATATTGAGGATACACACAATGACTATCACTTGAGAGAGCAGTCTAAATTTCATAACAATCAAGATGCTAAAAATGCGTTGGAAAACAATGGCGCAAAGGTGATGAAAGAATTGCCAGTGGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTTCGCCAAAGCCTAGACACGTATCAAGCACGTGGAAATTTGCCGTTGGCTTCAAGTATGAGAATGCCACAGAGATCTTCCTCACAAGTAGACCGTTTAGGTATTTTATCTTTGGAAGACTCAACTCAGGATGTAAATGGAGCTAGTTTACTTGGTACGGGACTGAGGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATTCAGTCATTGTGGCATTTAAGACGCTTTCGGGTGGAATTTCTTGCCAGATCAAGATCAGAGCATGATCATGTGGGCAATCCCTGTGTTGTCTGTGCCTTGTATGAAATATTTACTGCTCTAGACCTTGCTTCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACATCCCTGCGGATAGCTCTAAGCAACCTGTATCCACATAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGGTACTGGCAGTGATATTTGACTGCCTTCATCGATCATTTACTCGTGGTGTTTCTGATGTAAAAACCGTGGAAAGCAAGTGCATGGGGTCTTGGGATTGTGCAGCTGGTAGTTGTATAGCACATTCACTTTTTGGAATGGACATTTTTGAACAAATGAACTGCCACCATTGTGGTCTTGAGTCCAGACATTTGAAGTATACTTCCTTCTTTCACAATATAAACGCCAATGCCCTAAGGACAATGAAGGCTATGTTTCCCGAAAGCTCCCTTGACAAGCTTTTGAATCTTGTGGAGAGGAACCATCAATTGGCTTGTGATCTAGAAGTTGGTGGCTGTGGCAAGCTCAACCACATCCATCACTTTCTTTCTACCCCACCCCATGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGCGAGAGTGCTGATGATATAACTGCAACTCTGGCAGCCCTGAGCACCAAGATAAATATCAGTGTCCTTTATCGCGGTTTAGATCCTAAAAGCACCCATAACTTGGTTTCAGTGGTTTGCTACTATGGTCAGCATTATCATTGCTTTGCTTATAGTCATGACCATGGCCAATGGATTATGTATGATGACAAGACTGTTAAGATAATTGGTGGATGGGCTGATGTTCTGACTATGTGTGAGAGAGGGCATCTACAGCCTCAGGTTCTCTTCTTTGAAGCTGTAAACTAG 4935 0.4195 MGHKKRNSVPRSKLSPAASPVAQSPIGGAANGSTSPEADSIIVFDQNLTNPSKIELVSHQSEGSDFSAIKVECERALTTFRRGNHNRAMKLMKELCLKEDGSPYSAFIYRIHGFICFKVASIITDCSSKQRHLKHAVESARRAVELSPNSIEYAHFHATVMLEAATEGKDYEDVVHECERGLAIENPNDPAKETLQDESEQKVSSLEDRILHVQAELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRATEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQQSESPQSPNEGDRDDRALDVSSGSSQRIGERRRHVRNNGSSAERRKWVLTYWDSLSMDVKKEWLRIKISDIMSHFSSTKDTLPKDVLSEALFYAEANKTWKFWNCGICAEKFPNQEFHRQHVMHVHLQTLSPKMQRLLPQHVDNEWIEMILNCSWKPLDVSAAVKMLDYKAKLKGPSLPEDYLTQDYNDCFKDSSSSYHEKESLGYSIGNCTTESSKYYKNAESDAKEGVEDQQFMANPVTDCWPVSDDKERAKLLEKIHGVFEILIRHKCLAASHLHKVIQFSMGEIQGLAAGSELLKHDVDQTPMCICFLGASQLKKILQFLQEMSHACGLGRYSDKSSSPKNDLHDISQGPEIKDKIVLNGDASCLLLDECLLPTQVTPGTAQEVVFDDMVTPSSPDGISDNSGAWLSWLYSSRPIGDQLTSWIRTKEDKTCQGQEMVRTLDKEFYQLHSLCQKKSDRISYEEALQTIEDLCLEEGKKRENVGEFVQRSYESVLKRRREELAESENEMMYAGNRFEMDCISNVLQEAEAMNVNQFGYEETYTGVTSQLCDLESGEDDEWRMKDCLHQMDGCIEIAIQKLKEHSSIEISKVDAEIIKCVSEVQQLELKLGHVSANDYRAIIVPLVKSYLKTLLEDLAEKDAREKSDAAGEAFLAELALDSKKISKGVNENTRHVEKTKDKKKNKDHRKTRDLKATSGSMHPLLQSTTLDSDLVSPDSDFQDHEVVYMNDDDLEHHEEEFRRKIELEEEEKKLEETLELQRRIENEAKQKHLAEQQKKLSGTCVEEVTDKLQDCQLKPVADGSDAQEHGRLPMQEQLAKENGFPNNLDVVLITTSNGSMMPTKSSADSDSQKINHLQQSKVKQADIPNGIVPENGLPFPDRRAGKKHKRNKNSSKMVDGKLEYVSLENENIEDTHNDYHLREQSKFHNNQDAKNALENNGAKVMKELPVEDEEEERFQADLKMAVRQSLDTYQARGNLPLASSMRMPQRSSSQVDRLGILSLEDSTQDVNGASLLGTGLRNEVGEYNCFLNVIIQSLWHLRRFRVEFLARSRSEHDHVGNPCVVCALYEIFTALDLASKDSRREAVAPTSLRIALSNLYPHSNFFQEAQMNDASEVLAVIFDCLHRSFTRGVSDVKTVESKCMGSWDCAAGSCIAHSLFGMDIFEQMNCHHCGLESRHLKYTSFFHNINANALRTMKAMFPESSLDKLLNLVERNHQLACDLEVGGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDITATLAALSTKINISVLYRGLDPKSTHNLVSVVCYYGQHYHCFAYSHDHGQWIMYDDKTVKIIGGWADVLTMCERGHLQPQVLFFEAVN 1644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04125 1644 MobiDBLite consensus disorder prediction 1163 1189 - -
Trre15g04125 1644 MobiDBLite consensus disorder prediction 292 334 - -
Trre15g04125 1644 MobiDBLite consensus disorder prediction 303 334 - -
Trre15g04125 1644 SUPERFAMILY Cysteine proteinases 1313 1641 IPR038765 -
Trre15g04125 1644 Gene3D Tetratricopeptide repeat domain 65 209 IPR011990 GO:0005515
Trre15g04125 1644 Coils Coil 785 805 - -
Trre15g04125 1644 Pfam Protein of unknown function (DUF629) 345 871 IPR006865 -
Trre15g04125 1644 Pfam Ubiquitin carboxyl-terminal hydrolase 1314 1619 IPR001394 GO:0004843|GO:0016579
Trre15g04125 1644 Gene3D Cysteine proteinases 1299 1642 - -
Trre15g04125 1644 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1643 - -
Trre15g04125 1644 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1313 1643 IPR028889 -
Trre15g04125 1644 Coils Coil 1032 1072 - -
Trre15g04125 1644 Coils Coil 196 223 - -
Trre15g04125 1644 MobiDBLite consensus disorder prediction 995 1011 - -
Trre15g04125 1644 ProSitePatterns Zinc finger C2H2 type domain signature. 400 421 IPR013087 -
Trre15g04125 1644 CDD Peptidase_C19 1404 1641 - -
Trre15g04125 1644 MobiDBLite consensus disorder prediction 1 35 - -
Trre15g04125 1644 MobiDBLite consensus disorder prediction 964 1013 - -
Trre15g04125 1644 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04125 Trre-Chr15 51782255 51791746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04125 65 1641 C2H2 Transcription Factor Family AT3G47890 53.966 0.0 1627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04125 - - gmx:100799759 2427.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04125 15 51782255 51791746 Trre15g04125 15 51782255 51791746 ECH