Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04122 ATGGGAGGTGGAGATCCTTCTTCCTTATCGGATATGGAGGAAGAGGAGGAGGAGGAGGAGGAAAAAGATGTGAAGGTGAAAGATTCAGTTGACATTCTCTCAACATTTCGACTCCTTGATGCTCCTATACTTTTGTTCGTTTGTTTTCATAAAGCTCTCCGTTCTGAACTCGATCAGCTTCGTTTATTCACTGAAACGGCGTCGTTGGAAGATGATCCAAACCGTTGCCGTGAATTAATTCTTAAGCTTCAACAACGATTTCAGTTTCTTAAAATAGCTCTCAACTATCATTGCGCTGCTGAAGATGAGATTATCTTCCATGCGCTGGATACACATGTAAAAAATGTTGTATGTACATATTCCCTTGAACATAACAGCACCAGTGGGATGTTTGATTCTATTTTACACTTCTTGGATGAGCTGATGGGCCCTAGTGAGAATATTTCCAAGCTGTTCCGAGAACTTGTACACTGCATTGATATCTTGCAAACCTCCATCTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTCTGTTGATCCAAAAATTGTCTACTAAAGAACAAGCCTCACTTGTGTGGCAGTTCATATGTAGTGTTCCTATAATTTTGCTGGAAGAAATTTTGCCATGGATGGTATCTTTCCTTTCAGCAGATAAACAAGCAGAAGTTACTCAGTGTTTTAATGAAATTGCACCAATGGAAAGAGCACTGCAAGAGGTTTTGGCTTCTTGGCTTGAAAGCAACAAACAAACCACCACTGAGACATATTTTCAGAGTGAAGAAATTCAAGGCTCTCATGGATTCCTACGTATAGAAAGATCATTTGGGCCGAGTTCGTGCAATGAGAACTCCAAAGAAATTTCAAGTAAGAGGAAAGTGAATGGCAAAGAAACAGAAGATGGGGTGAACCAAGTTAAAGTTCTTCATCTTTGGCATAATGCCATCAAGAAAGATTTGAAAGAAATTCAGCAAGAACTTTATCTAATGAGAAGTTCCAGCTGTTTTCAAAATTTAGACTCAATACTTATCCAACTAAAATTTTTGGCCGATGTCCTCGTCTTTTACAACAATGCTTTGAAGAAATTCTTCCATCCTGTACTGAACAAACTTTACCATGACCGGTTTTCCAAGTCTACTGAACATTTTCTAGGTCAAAGTCACATTGAAGATATACAACAGTTACTATTCTATAATTCAGAAAGTGGAATGCCTTTGACCAAATTTGTAGAGAAGCTTTGCGGAAAACTTGAATCATTTGTATCAGCAGTCAACAGACAATTTTCACTTCAAGAAATCGAGGTGTTTCCTATCTTTAGAAAGAACTGCATAAATGGAACACAAGTGAGGCTTCTAAGCTCGAGCTTGCATATGATGCCACTTGGGTTACTAAAATGTGTTATCACTTGGTTCTCAGTTCACTTGTCTGAACAAGAATCCAGGTCCATTCTCTATTGCATAAAGGAAGGAAATAATTCTGTCAGTAAAGCTTTTGCACCATTGTTACATGAATGGTTCCGCATTGGTTATTCAGGTAAAACCTCTATCGAAAAATTCCGACAGGACCTGCAGCATATGTTCAAAAGAAGACACTCTTTTTCATCTGAGAAAATGAAGGAAGTTTGTGAGGATTCATTCTTAAATTCCGACAAGCAGCCACATAAAAGTTGCGGAAAGAATTGTTTGTCCTATTCTTCATCTTCTGGATCCAAAAATGTGAACAAGTATGAGACACCATACTCCACAGGAATTAATCTGCACATATTTTTCCCTGCCACAGCTATGAAGTTTCAGCATCCAAGATTTCATGCAGAAAATCCTTCTTCTGTTTCTTTTCTTAATGATCCAAAACCAATTGACCTGATCTTCTTCTTTCACAAAGCTATTAAGAAAGATTTGGATTACCTAGTTCTTGGCTCAGCTCAGTTAGAGGAACATGGTGAGTTGGTTACAGATTTCCGCAAACGATTCCATCTCATATGTTTTCTGCATCAAATCCATAGTGATGCAGAGGACGAGATAGTTTTTCCAGCCTTGGAGGCAATAGGCCAAGGCAAAAACATTAGCCTTGCCTACACCTTTGATCACAAACATGAAGTTGAGCACTTCAGTAAAATATCTCGCATTCTTGATAAGATGGCTAAATTAGATCTTTCAGTTTCTACTACTGATTCAAAGATAAGGGACAAGAGACTGATAAGGCGTCGTGATTTAATCAGGAAGCTGCAAGAAAGGTGCAAATCAATGCATAAGTTACTTTCTGATCATATAAACCGCGAGGAAATAGAAATTTGGCCAATAATTAGAGAGTTCTTCTCGAACCGGGAGCAAGGGAAGATTGTAGGATGCATGCTTGGAAGAATAAGAGCAGAAATATTACAAGATATGATACCTTGGTTAATGTCATCTTTAACCAAGGAAGAGCAACATGTTTTAATGTTCTTATGGTCCATGGTTACTAAGAATACAATGTTTGATGAATGGTTAAGTGATTGGTGGAATGGGTACAGCTTAGCTAAGGCAGAAGACGGTTCAAATGATGCTCCTCTAGAGAATGCTGAGCCACTGGAAATTATATCCAAATATTTGTCTGAAGAAGTTCTCAATGAGTTGCAAGCAGAATCATCTGCAACTGAAAGATTAAATTTGTTGCAGAAGGATCATACTGGCAATAATTTTGAGCTGTCCAACTACAACGTTGATGACAGTGTTAAGGTTAATTATGCAGAACAAAATTATAGTCAATGTTCAAAATGCAAAAATAAATTTCATGATATTAAAAAGCATGCCTGCAATGAAGTATCAAATACCACAAATCCAATATACCATGAAAGTCGGTCGATTCAATATTTTGACAAGTCTGGGCATTATGACCGACTTCTGAAATTGAGTCAGAATGATCTGGAGAAGGTAATAAGAAGGGTATCTCGTGACTCTTGCCTAGATCCTCAGAAAAAGTCGTACATAATACAGAGCCTACTAATGAGCCGTCGGATTATTAGACAGCAGATCTCTTCTATGGAGGTCAATATCAAAGGCGATGGACAGGAATTCCCTGGGAAACATCCATCTTACAGGGACCCTCTCAAACAAATCTATGGTTGCAAACACTACAAGAGAAACTGTAAGCTTTTTGCCCCCTGTTGCAACCAACTTCATGCTTGCATACATTGCCATGATGAGGTATCAGATCATTCAATTGACAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGGTGATTCAACCAGTCAATGCTACATGCTCGTCAGTTTCTTGCTGTAATTTATCCATGGCAAAATATTACTGCAGGATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCACTGTCCCTATTGCAACTTATGCCGAGTTGGAAAGGGTTTGGGTGTCGACTTTTTTCATTGTATGAGTTGCAATGCTTGTATGTCTCGTTCTCTTATGACACATATATGCAGGGAGAAATCTTTAGAGGAAAACTGTCCGATTTGTCATGAATATATATTCACATCCTGCTCTCCAGTAAAAGCCCTCCCGTGCGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACTTGCTTTAACTATACCTGCCCAATATGTAGCAAATCACTTGGAGACATGCAGGTCTATTTTAGGATGTTAGATGCACTATTGGCAGAGGAGAAAATGTCTGACGAGTTTTTGGGTCAAACTCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGAGCAGCTCCCTTCCACTGGCTTTACCATAAATGCCCTTGTTGTGGTTCCTACAACACTAGAGTTCTATGA 3816 0.3847 MGGGDPSSLSDMEEEEEEEEEKDVKVKDSVDILSTFRLLDAPILLFVCFHKALRSELDQLRLFTETASLEDDPNRCRELILKLQQRFQFLKIALNYHCAAEDEIIFHALDTHVKNVVCTYSLEHNSTSGMFDSILHFLDELMGPSENISKLFRELVHCIDILQTSIYQHMLKEEEQVFPLLIQKLSTKEQASLVWQFICSVPIILLEEILPWMVSFLSADKQAEVTQCFNEIAPMERALQEVLASWLESNKQTTTETYFQSEEIQGSHGFLRIERSFGPSSCNENSKEISSKRKVNGKETEDGVNQVKVLHLWHNAIKKDLKEIQQELYLMRSSSCFQNLDSILIQLKFLADVLVFYNNALKKFFHPVLNKLYHDRFSKSTEHFLGQSHIEDIQQLLFYNSESGMPLTKFVEKLCGKLESFVSAVNRQFSLQEIEVFPIFRKNCINGTQVRLLSSSLHMMPLGLLKCVITWFSVHLSEQESRSILYCIKEGNNSVSKAFAPLLHEWFRIGYSGKTSIEKFRQDLQHMFKRRHSFSSEKMKEVCEDSFLNSDKQPHKSCGKNCLSYSSSSGSKNVNKYETPYSTGINLHIFFPATAMKFQHPRFHAENPSSVSFLNDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEEHGELVTDFRKRFHLICFLHQIHSDAEDEIVFPALEAIGQGKNISLAYTFDHKHEVEHFSKISRILDKMAKLDLSVSTTDSKIRDKRLIRRRDLIRKLQERCKSMHKLLSDHINREEIEIWPIIREFFSNREQGKIVGCMLGRIRAEILQDMIPWLMSSLTKEEQHVLMFLWSMVTKNTMFDEWLSDWWNGYSLAKAEDGSNDAPLENAEPLEIISKYLSEEVLNELQAESSATERLNLLQKDHTGNNFELSNYNVDDSVKVNYAEQNYSQCSKCKNKFHDIKKHACNEVSNTTNPIYHESRSIQYFDKSGHYDRLLKLSQNDLEKVIRRVSRDSCLDPQKKSYIIQSLLMSRRIIRQQISSMEVNIKGDGQEFPGKHPSYRDPLKQIYGCKHYKRNCKLFAPCCNQLHACIHCHDEVSDHSIDRKSITKMMCMKCLVIQPVNATCSSVSCCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDFFHCMSCNACMSRSLMTHICREKSLEENCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEEKMSDEFLGQTQVILCNDCEKKGAAPFHWLYHKCPCCGSYNTRVL 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04122 1271 FunFam Zinc finger protein-related isoform 1 1160 1209 - -
Trre15g04122 1271 Pfam Hemerythrin HHE cation binding domain 50 181 IPR012312 -
Trre15g04122 1271 SUPERFAMILY Zinc hairpin stack 1102 1157 IPR037275 -
Trre15g04122 1271 SMART ring_2 1165 1206 IPR001841 -
Trre15g04122 1271 CDD RING-H2_Pirh2-like 1164 1207 - -
Trre15g04122 1271 Gene3D nmb1532 protein domain like 615 788 - -
Trre15g04122 1271 Gene3D nmb1532 protein domain like 42 199 - -
Trre15g04122 1271 Pfam Zinc-ribbon 1212 1269 IPR039512 -
Trre15g04122 1271 SUPERFAMILY RING/U-box 1157 1211 - -
Trre15g04122 1271 ProSiteProfiles Zinc finger CTCHY-type profile. 1101 1164 IPR017921 -
Trre15g04122 1271 CDD Hr-like 49 179 - -
Trre15g04122 1271 MobiDBLite consensus disorder prediction 1 24 - -
Trre15g04122 1271 Gene3D - 1236 1271 - -
Trre15g04122 1271 CDD Hr-like 621 767 - -
Trre15g04122 1271 ProSiteProfiles Zinc finger CHY-type profile. 1029 1098 IPR008913 GO:0008270
Trre15g04122 1271 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 664 1271 - -
Trre15g04122 1271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1158 1209 IPR013083 -
Trre15g04122 1271 Pfam CHY zinc finger 1036 1111 IPR008913 GO:0008270
Trre15g04122 1271 SUPERFAMILY CHY zinc finger-like 1027 1093 IPR037274 GO:0008270
Trre15g04122 1271 ProSiteProfiles Zinc finger RING-type profile. 1165 1207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04122 Trre-Chr15 51760373 51769967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04122 608 838 C2H2 Transcription Factor Family AT3G18290 26.695 8.93e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04122 K16276 - gmx:100802706 1995.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04122 15 51760373 51769967 Trre15g04122 15 51760373 51769967 ECH