Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04112 ATGGCTTATAGACGTTGCCTCTTGCAAAGAGGAAAGAACCTCATAGATCGGAGATGCCACCCTTCTTTCACCTATATTCTCCATTCCGACGAAACGAAACGCGACCGTTCAGATGAGAAGAAATCATCGTCTTCACAAGGAATCACTAACAACACTTTTATCCAATCAATGTCCTTTCGAAGCTCTCTTAATGGATCAATGGCTTTTTCTCCGTTCGCTGGATATAATTTCTGCCGAAATATGTCGACACTGAATCGGGATGATTCAGATAAGATTAGCGTAATGAGTGATGTAGCTGATGTTCTCACTGATACTTCCATGGATGCTGGTATTCTCACTGAGACTGTTGTGGATGCTGCTGCTGTATCTTCTCAGGCTCCGGTTGTTAGTGAAGTTGTCATTGCTGCTGCTGATTCTTATTTGCCTGTACAAGCTTTGCAGTATGCCATTGATGCTGTTCATTCCTTCACTGGGTTAAACTGGTGGGCGGCCATAGTTCTAACAACTCTCTTGATTCGAACCGCAACCGTTCCACTCTTAATAAATCAACTCAAGGCCACTTCTAAGCTTACGCTTATGAGGCCTCATTTGGAAGAGATAAAGGAAGAGATGGATGGGAAGACATTTGATCCCGAGGCTGTTGCTGAAGGTCAGAAGCGGATGAAACAGCTATTCAAAGAATATGGTGTGAGTCCTTTAACGCCATTGAAGGGACTCTTTATTCAAGGTCCTGTCTTCATTAGTTTTTTTCTTGCGATATCTAACATGGCTGAAAAAATGCCATCATTCAAGCATGGTGGAGCTTTTTGGTTTACTGATCTCTCAACTCCAGATGCCTTATACATTTTTCCAGTTTTGACTGCATTGTCATTTTTAATAGTAGTAGAGTGTAATGTGCAAGAAGGAATGGAAGGAAATCCTATGGGTGATACCATGAAAAAATTCTCGAGGATTCTTGCTTTTGTTTCAGTTCCTCTCACCATGGGTTTTCCAAAGGCAATATTTTGTTACTGGATTACATCAAATTTGTTTTCTCTAGCATATGGAACGGTGCTTAAAGTTCCTGGTGTAAAGAAAACTTTGGGTATTCCTGAATTACCAGCAGCACCCACCAGTTCTCCACAATCTCCCTTCTCTATTTTTCCGGCACTAAAACAAACTGCATCAGCTGCAGATGATCAAAGTTCATTGCCAGTTGAATCATCAAAACGACCAAATAAAAAGACATCTTCTTCTGCTATTATTAGTCAAAGGCTAAGAAGCTTAGAGAAACAAGTAAAAGGAAGAAAGAAAAACAAGAAAATTGACTAG 1311 0.4058 MAYRRCLLQRGKNLIDRRCHPSFTYILHSDETKRDRSDEKKSSSSQGITNNTFIQSMSFRSSLNGSMAFSPFAGYNFCRNMSTLNRDDSDKISVMSDVADVLTDTSMDAGILTETVVDAAAVSSQAPVVSEVVIAAADSYLPVQALQYAIDAVHSFTGLNWWAAIVLTTLLIRTATVPLLINQLKATSKLTLMRPHLEEIKEEMDGKTFDPEAVAEGQKRMKQLFKEYGVSPLTPLKGLFIQGPVFISFFLAISNMAEKMPSFKHGGAFWFTDLSTPDALYIFPVLTALSFLIVVECNVQEGMEGNPMGDTMKKFSRILAFVSVPLTMGFPKAIFCYWITSNLFSLAYGTVLKVPGVKKTLGIPELPAAPTSSPQSPFSIFPALKQTASAADDQSSLPVESSKRPNKKTSSSAIISQRLRSLEKQVKGRKKNKKID 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04112 436 MobiDBLite consensus disorder prediction 389 436 - -
Trre15g04112 436 CDD 5TM_Oxa1-like 158 355 - -
Trre15g04112 436 NCBIfam membrane protein insertase YidC 160 347 IPR028055 -
Trre15g04112 436 MobiDBLite consensus disorder prediction 389 419 - -
Trre15g04112 436 PANTHER OXA1 118 423 IPR001708 GO:0016020|GO:0032977
Trre15g04112 436 Pfam 60Kd inner membrane protein 161 348 IPR028055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04112 Trre-Chr15 51606028 51612078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04112 50 435 Chloroplast and Mitochondria Gene Families AT2G28800 23.869 6.34e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04112 K03217 - gmx:100817052 615.535