Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04105 ATGGAACCTCCTCTCATCAACGACTCTAATTTCTCTTCATCCAACCCTTCTTTGTCAGAAATTTGGCCTCATTTCCCTCCACAAAACAACAACAACAACAATAAGAAGAAAAGAAAACTAGCACTCTCAGGTGATGGTAGCAGTAACAACAATTCATCAGAGGAACATCAACAACAAAATGTCAAACCTTCTTCTCAGCCTCATCCTAAGCAAGACTATATTCATGTCAGAGCCAGAAGAGGCCAAGCCACTGATAGCCACAGTCTTGCTGAAAGAGCAAGAAGAGAAAAGATTAGTGAGAGGATGAAAATTCTACAAGATTTAGTTCCAGGATGTAGCAAGGTAATTGGTAAAGCACTTGTGTTGGATGAGATAATCAATTATGTTCAATCACTGCAAAGCCAAGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGATTGAATATGAACACCTCTATTGAGTATTTCCCTTCAAAAGATGTTGGTGCTCAGCCATTTGACCTTTCTGGAATAATATTTGGACCGCAAGCAAGCCGAGGATATGCTCAGGGATCACAATCAGGGTGGCTACATATGCAGATAACTGGTGGTTTCAATAAAGCATCATAA 618 0.3964 MEPPLINDSNFSSSNPSLSEIWPHFPPQNNNNNNKKKRKLALSGDGSSNNNSSEEHQQQNVKPSSQPHPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCSKVIGKALVLDEIINYVQSLQSQVEFLSMKLEAVNSRLNMNTSIEYFPSKDVGAQPFDLSGIIFGPQASRGYAQGSQSGWLHMQITGGFNKAS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04105 205 MobiDBLite consensus disorder prediction 1 69 - -
Trre15g04105 205 Coils Coil 129 149 - -
Trre15g04105 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 151 IPR036638 GO:0046983
Trre15g04105 205 Pfam Helix-loop-helix DNA-binding domain 86 133 IPR011598 GO:0046983
Trre15g04105 205 CDD bHLH_AtBPE_like 72 153 - -
Trre15g04105 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 132 IPR011598 GO:0046983
Trre15g04105 205 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 29 182 IPR024097 GO:0006355
Trre15g04105 205 Gene3D - 79 158 IPR036638 GO:0046983
Trre15g04105 205 SMART finulus 88 138 IPR011598 GO:0046983
Trre15g04105 205 FunFam Basic helix-loop-helix transcription factor 79 152 - -
Trre15g04105 205 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04105 Trre-Chr15 51564513 51566862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04105 36 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 56.497 6.42e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g04105 HLH 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04105 - - gmx:100799646 271.552