Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04076 ATGTCATTCAAAAGCATAGTGCGAGAGCTCAAGGGGATAAAAAATGGTATAGGTAGCATATCAAAGCGGAGTTTTGAAAGCAAGCATTGGCTCTATCGTTCAAAGTCACATGTTGCTCCGGATGTAACTCAAACGGAACCTATTCAACAGGGACAGTGGGCAAGTCTACCACCTGAATTACTTTTGGATATAATCAGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCCCGTGCTGTTGTTGTATTTTGTGGTTCGGTATGTAAATCATGGAGGTCTGTCACAAAAGAGATCATCAAGACACCTCAGCAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCTGGTCCCCGTGATTATCCGATACAGTGCTTTATTAGGCGGAACCGAGAAACTTCTACATTCATGTTGTACTTGGGTTTGGTGCCATCGGAGCATGAGAACAATAAGTTGTTATTAGCCGCCAGAAAGATAAGAAGGGCCACAGGCACCGACTTTATCATATCCTTGGCTGCAGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAGGTCTAATTTTTGGGGCACCAAGTTTGCTATATATGATAGTCAACCTCCACATGACGCTGCAGTTCAACCAAATCGTCGACCAAGTAGGAGATCTCATTCTAAGCAGGTCTCACCAAGAGTTCCAGCATGTAGCCATCTTGTTAGCACAATTTCCTATGAGCTGAATGCTCTCTGGACTAGAGGGCCAAGAAGAGTGCACTGCATCATGAACTCTATACCTATCTCAGCTATTCAGGAAGGGGGAAACGCCCCAACTCCAACATCCTTACCTCAAATATTCAGTGAACCTTTTCCTCTCTCACCGGCACTGAAAGAAAAAAGTCCAATGCCCGATTCGTACTCTGGCAGCCTTTCAGAGCTACCAGAACTAAGCCAGGGATCGGCTGATCCCTTGATACTCAAAAACAAGTCTCCAAGATGGCATGAACAGCTCCAGTGTTGGTGCCTAAACTTCATGGGTCGTGTTACAGTTGCATCTGTAAAGAACTTTCAACTTGTAGCTGCTGTTGATCCCTCTCATAATGTTTTGCCTGCAGAGCAAGAAAGGGTAATCTTGCAGTTTGGAAAGATCGGGAAAGATATATTCACAATGGACTACTCATACCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGACAAGCTTTGATACTAAACCCGCCTGTGAATGA 1239 0.4455 MSFKSIVRELKGIKNGIGSISKRSFESKHWLYRSKSHVAPDVTQTEPIQQGQWASLPPELLLDIIRRVEESETSWPARAVVVFCGSVCKSWRSVTKEIIKTPQQCGRITFPISLKQPGPRDYPIQCFIRRNRETSTFMLYLGLVPSEHENNKLLLAARKIRRATGTDFIISLAADDFSRASNKYVGKLRSNFWGTKFAIYDSQPPHDAAVQPNRRPSRRSHSKQVSPRVPACSHLVSTISYELNALWTRGPRRVHCIMNSIPISAIQEGGNAPTPTSLPQIFSEPFPLSPALKEKSPMPDSYSGSLSELPELSQGSADPLILKNKSPRWHEQLQCWCLNFMGRVTVASVKNFQLVAAVDPSHNVLPAEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04076 412 Pfam F-box domain 53 98 IPR001810 GO:0005515
Trre15g04076 412 MobiDBLite consensus disorder prediction 204 229 - -
Trre15g04076 412 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
Trre15g04076 412 SUPERFAMILY Tubby C-terminal domain-like 102 412 IPR025659 -
Trre15g04076 412 Pfam Tub family 114 407 IPR000007 -
Trre15g04076 412 Gene3D Tubby Protein; Chain A 111 412 IPR025659 -
Trre15g04076 412 Gene3D - 46 101 - -
Trre15g04076 412 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Trre15g04076 412 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Trre15g04076 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Trre15g04076 412 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Trre15g04076 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Trre15g04076 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Trre15g04076 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Trre15g04076 412 PANTHER TUBBY-RELATED 43 410 - -
Trre15g04076 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04076 Trre-Chr15 51271392 51273061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04076 1 412 TUB Transcription Factor Family AT2G18280 62.350 1.02e-178 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre15g04076 Tub 2.1e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04076 K19600 - gmx:100805380 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04076 15 51271392 51273061 Trre15g04076 15 51271392 51273061 ECH
Trre15g04076 15 51271392 51273061 Trre9g01056 9 8455686 8457850 ECH
Trre9g01056 9 8455686 8457850 Trre15g04076 15 51271392 51273061 PCT