Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04072 ATGGGAACTGATAGTTGTGAAGTGGTAGAGACATTACCAGATCCCCACTCTTTTAAGGTACATCGGAGAATGTGCACAGAACTCAAGAAATTAGTTGATAGAGTGTTAAAGATATTTCCGCAAATAGAGGAAGCACGCCCTCGGTCCTCATCAGGAATACCGGCTCTTGTTTTGCTAATCAGTACTCTTGATAAAGCCAAACAAGTTCTGAATAATTGTTCTGATTCTAGTAAACTCTACCTGGCTATGACAGGGGAGTCAATAGTGTCAAAATGCCAAAAGGCAAGAAAGTCATTAGAGAAAAGCTTAGTGCAGATTCAGGATATAGTTCCTGTTATGTTGGCTGCAGAGATTTCTCGAATAGTTGATGACCTTAGGTGTGTGACCTTTGTCCTGGATTCTGCTGAAGAAGAGGCTGGAAGGGTTATGAGAGAATTGCTCCAGCAAGGTCCTTCAACCTTGGATACTGATTCAAAAGAAAACTCAGATGTCAAATCTCTTCAGTTTGCCGCGGCAAGACTTAATATTACATCCGCAACATCCGTCGTAATAGAAAAAAGATCTATTGGGAAGTTACTGAAAAAAGTTGGACCACAAGAGGAAAATAAAAAGGCGATCTTGCAAAATCTGTTGCATCTTGTGAAAAAGTATGGAAACTTATTAAATACAAAAGAACAAGCGAAGGTCTATTCTCATCATGAAGAACCAGCGGCAACTGAGAACTCTGGTCGTGATTCTTTACGCACCGATCATGTGAAGTTGGGGCCATATTTGAACTATGATCAGTATGGAACACGTGTCAGCGAGTTGAGTAGAGTTGCACCCCCGAAGGAATACACTTGTCCGATATCTTTAAGGTTGATGTATGATCCTGTTGTCATTGCTTCAGGAGAAACATGCGAAAGGATGTGGATACAGAAATGGTTTGATGAGGGTCATTTTATATGCCCGAAAACTAAAAAGAAACTGCCGCATATGGAGATGACTCCTAACGTTGCTTTAAAGAAAGTAATATCAAACTGGTGCAAAACTAATGGAGTCTCGATTCCTAACCCAAGTAGGCAGGCAGAAGACATTCGCTTGTGGGAAGATTCCATCGCTTCCATTAGGAGTTTTGGAAGTTCCATGAATGGTTTGAACTTGCCAATGGATCTTAGTAACATTTCACTTGGATCGTTAGATAACAGTTATAATTCAGATTCCTCACTTGTGAAGGCTAGTCATGGCTTAAATTCGATGTTGATCAACACCAGAAATGGTTCTTGCGGGCATCAATCTCATTCACAAATACATGACAAATATCTGGTACCCTTGTCTAAACTTCACGAGCGTCAATGGGATTCGCAATGCCAAGTCGTCGAAGATATGAAAATAGGTTTCAAATGCAATAACCAAGCTTTTACCTCTGTGTCGTCGGATAATTTCATTGACCCACTTGTGAGGTTTCTGAGCACTGCATATGATAAGCATGACACAAAAGCTCTGAGAAGTGGATGTCAGTTGCTGTTGGAATTTACAAAGTACTGCAGAAATTGTGCGACAAACTTAAGTGAAGATACATGCAGTGTGTTGGCAAGTCTTCTTGAGTCAGACGTGATTGGTGAAGCTCTTGCCATACTGGAAACATTGTCGAATCAGTGGTCCAATAAAGCTAACATTGCAGCTTCCGGTGCACTAACCTCTATTTCAAAGATCCTTGATTCTGGTAACAAAGAGTACCAACACAGAGCTATTAGAATAATGTTGAATTTTTCATCCAATACCGAACTTTGTTCTTTCATGGCATCTCTCGAGTGCATCCCAAAAATACTACCATTTTTCGAAGACAAATCCCTTTGGAGAGACTGTATATGTATATTGAAAAACCTCTGTGATACTAAAGATGGTAGGATTTCTATTGTTGAAACTAAGGGATGCATGTCTTGTGTTGTTGAAATACTTGGTTCTGGCACCGACGAAGAAAAGGAACCGGCACTAGCTATTGTACTCTCTTTGTGCTCTCAAAGCTTAGAATATTGTGAGCTGGTTATGTACGAGGGTATCATACCATATCTTGTCAATATCTCCAATATGGGAAACGATAGCACAAAGGTGATAGCGTTTGAACTACTCCGACTTTTAAGGGAAGTTGAGCCAAATCTCAGCAACTCTCAAGATTCTAACAAGGATCACTTTGAAGAAAAGAAATCGTCAAAGAAGTCCAACTCAATTTTTAAGAAGCTATCACGGTTCGGAAAATCAAGTTCAGATTCATCAAATAACAAGAGATGA 2271 0.3998 MGTDSCEVVETLPDPHSFKVHRRMCTELKKLVDRVLKIFPQIEEARPRSSSGIPALVLLISTLDKAKQVLNNCSDSSKLYLAMTGESIVSKCQKARKSLEKSLVQIQDIVPVMLAAEISRIVDDLRCVTFVLDSAEEEAGRVMRELLQQGPSTLDTDSKENSDVKSLQFAAARLNITSATSVVIEKRSIGKLLKKVGPQEENKKAILQNLLHLVKKYGNLLNTKEQAKVYSHHEEPAATENSGRDSLRTDHVKLGPYLNYDQYGTRVSELSRVAPPKEYTCPISLRLMYDPVVIASGETCERMWIQKWFDEGHFICPKTKKKLPHMEMTPNVALKKVISNWCKTNGVSIPNPSRQAEDIRLWEDSIASIRSFGSSMNGLNLPMDLSNISLGSLDNSYNSDSSLVKASHGLNSMLINTRNGSCGHQSHSQIHDKYLVPLSKLHERQWDSQCQVVEDMKIGFKCNNQAFTSVSSDNFIDPLVRFLSTAYDKHDTKALRSGCQLLLEFTKYCRNCATNLSEDTCSVLASLLESDVIGEALAILETLSNQWSNKANIAASGALTSISKILDSGNKEYQHRAIRIMLNFSSNTELCSFMASLECIPKILPFFEDKSLWRDCICILKNLCDTKDGRISIVETKGCMSCVVEILGSGTDEEKEPALAIVLSLCSQSLEYCELVMYEGIIPYLVNISNMGNDSTKVIAFELLRLLREVEPNLSNSQDSNKDHFEEKKSSKKSNSIFKKLSRFGKSSSDSSNNKR 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04072 756 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Trre15g04072 756 MobiDBLite consensus disorder prediction 715 756 - -
Trre15g04072 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 349 IPR013083 -
Trre15g04072 756 Gene3D - 456 755 IPR011989 -
Trre15g04072 756 MobiDBLite consensus disorder prediction 737 756 - -
Trre15g04072 756 SUPERFAMILY ARM repeat 440 717 IPR016024 -
Trre15g04072 756 CDD RING-Ubox_PUB 276 328 IPR045210 -
Trre15g04072 756 SUPERFAMILY RING/U-box 269 351 - -
Trre15g04072 756 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Trre15g04072 756 Pfam U-box domain 276 345 IPR003613 GO:0004842|GO:0016567
Trre15g04072 756 MobiDBLite consensus disorder prediction 720 734 - -
Trre15g04072 756 PANTHER U BOX DOMAIN-CONTAINING 22 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04072 Trre-Chr15 51246170 51249352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04072 15 730 U-box Gene Family AT4G36550 38.292 2.25e-136 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04072 - - gmx:100798951 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04072 15 51246170 51249352 Trre15g04072 15 51246170 51249352 ECH
Trre15g04072 15 51246170 51249352 Trre9g01054 9 8450714 8454030 ECH
Trre9g01054 9 8450714 8454030 Trre15g04072 15 51246170 51249352 PCT