Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04068 ATGGCAACATCTTGGACTGCAAGGCAGAACAAATTGTTTGAACAAGCACTGGCTTTATATGATAGAGAAACACCTGACAGATGGCACAATGTTGCTAAAGTGGTTGGAAAATCAGTTGAAGATGTTAAAAGTCACTATGAAATCCTCAAAGAAGATGTTCAACGTATTGAGCATGGTCGTGTCCCTTTTCCTCGTTACAAAACTAACACCAACAATTAA 219 0.3836 MATSWTARQNKLFEQALALYDRETPDRWHNVAKVVGKSVEDVKSHYEILKEDVQRIEHGRVPFPRYKTNTNN 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04068 72 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 71 IPR044636 GO:0003700
Trre15g04068 72 CDD SANT 4 50 IPR001005 -
Trre15g04068 72 SUPERFAMILY Homeodomain-like 4 57 IPR009057 -
Trre15g04068 72 Gene3D - 2 63 - -
Trre15g04068 72 ProSiteProfiles SANT domain profile. 1 54 IPR017884 -
Trre15g04068 72 SMART sant 1 52 IPR001005 -
Trre15g04068 72 FunFam Transcription factor SRM1 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04068 Trre-Chr15 51196867 51197085 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g04068 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04068 - - lja:Lj4g3v0973380.1 130.954