Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04060 ATGTTTTTCTCTAACTACCAACAACAACAACAACATCAACATCATGATGATCATTTTGACACATACTCTTACCCTACTCCTTCTTCTTCTGTTGATTGTACACTCTCTCTTGCTACACCTTCCACTCGTTTATCTGAAGATCAAGACAAACAAAACCGTCGTTCTTCCCTTACTAGTTTCTTTTGGAACAAGAATCCTTCTAAATCTAAACAAAATTCTCAAACCAAATCTAACCGAGGTAACAATATTGGTAATAACTCTAACAATGATTCTCTTCTCGCTCGTCGATGTGCTAGTTGCGACACCACTTCTACACCACTCTGGAGAAACGGTCCCCGCGGCCCAAAGTCACTATGCAATGCATGTGGGATTAGATACAAAAAAGAAGAAAGAAGAGCAAATGCTGCAACCGTTAATGCCACGTCAGCAGTAACAAACAGTGGAGTAATCGAGTCAGGGCAAGTCTACAGCAACAATTCATGGTACGCACATCAACAGAGTCAAATGTATGGAAATGAGTTACGCTTTATGGACGATTCAGATGCAGAATCAGAAAATGGAATTCCTAATTTTCTTTCTTGGAGACTTAACACAAGCCTTGTTCATGATTACACAAGATGA 621 0.3961 MFFSNYQQQQQHQHHDDHFDTYSYPTPSSSVDCTLSLATPSTRLSEDQDKQNRRSSLTSFFWNKNPSKSKQNSQTKSNRGNNIGNNSNNDSLLARRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAATVNATSAVTNSGVIESGQVYSNNSWYAHQQSQMYGNELRFMDDSDAESENGIPNFLSWRLNTSLVHDYTR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04060 206 PANTHER GATA TRANSCRIPTION FACTOR 18 1 206 IPR044272 GO:0003700|GO:0009908
Trre15g04060 206 CDD ZnF_GATA 96 128 IPR000679 GO:0006355|GO:0043565
Trre15g04060 206 ProSitePatterns GATA-type zinc finger domain. 97 122 IPR000679 GO:0006355|GO:0043565
Trre15g04060 206 Pfam GATA zinc finger 97 131 IPR000679 GO:0006355|GO:0043565
Trre15g04060 206 SMART GATA_3 91 143 IPR000679 GO:0006355|GO:0043565
Trre15g04060 206 MobiDBLite consensus disorder prediction 1 23 - -
Trre15g04060 206 ProSiteProfiles GATA-type zinc finger domain profile. 91 127 IPR000679 GO:0006355|GO:0043565
Trre15g04060 206 MobiDBLite consensus disorder prediction 42 90 - -
Trre15g04060 206 MobiDBLite consensus disorder prediction 54 90 - -
Trre15g04060 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 94 139 - -
Trre15g04060 206 Gene3D - 93 148 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04060 Trre-Chr15 51124593 51125441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04060 24 206 C2C2-Gata Transcription Factor Family AT3G50870 44.033 2.73e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre15g04060 GATA 1.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04060 - - gmx:100799154 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04060 15 51124593 51125441 Trre15g04060 15 51124593 51125441 ECH
Trre9g01043 9 8310323 8311844 Trre15g04060 15 51124593 51125441 PCT