Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04059 ATGATGCATCATTGTTGCAGTAGCTCTCAACAAGCTTACATAATGGGAGGAACAACAACATGCACATGTGATATGTTTCATCCTCAAACCATGTTTTTCTCTAACTACCAACAACAACAACAACATCAACATCATGATGATCATTTTGACACATACTCTTACCCTACTCCTTCTTCTTCTGTTGATTGTACACTCTCTCTTGCTACACCTTCCACTCGTTTATCTGAAGATCAAGACAAACAAAACCGTCGTTCTTCCCTTACTAGTTTCTTTTGGAACAAGAATCCTTCTAAATCTAAACAAAATTCTCAAACCAAATCTAACCGAGGTAACAATATTGGTAATAACTCTAACAATGATTCTCTTCTCGCTCGTCGATGTGCTAGTTGCGACACCACTTCTACACCACTCTGGAGAAACGGTCCCCGCGGCCCAAAGTCACTATGCAATGCATGTGGGATTAGATACAAAAAAGAAGAAAGAAGAGCAAATGCTGCAACCGTTAATGCCACGTCAGCAGTAACAAACAGTGGAGTAATCGAGTCAGGGCAAGTCTACAGCAACAATTCATGGTACGCACATCAACAGAGTCAAATGTATGGAAATGAGTTACGCTTTATGGACGATTCAGATGCAGAATCAGAAAATGGAATTCCTAATTTTCTTTCTTGGAGACTTAACACAAGCCTTGTTCATGATTACACAAGATGA 711 0.3966 MMHHCCSSSQQAYIMGGTTTCTCDMFHPQTMFFSNYQQQQQHQHHDDHFDTYSYPTPSSSVDCTLSLATPSTRLSEDQDKQNRRSSLTSFFWNKNPSKSKQNSQTKSNRGNNIGNNSNNDSLLARRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAATVNATSAVTNSGVIESGQVYSNNSWYAHQQSQMYGNELRFMDDSDAESENGIPNFLSWRLNTSLVHDYTR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04059 236 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 124 169 - -
Trre15g04059 236 CDD ZnF_GATA 126 158 IPR000679 GO:0006355|GO:0043565
Trre15g04059 236 PANTHER GATA TRANSCRIPTION FACTOR 18 4 236 IPR044272 GO:0003700|GO:0009908
Trre15g04059 236 Pfam GATA zinc finger 127 161 IPR000679 GO:0006355|GO:0043565
Trre15g04059 236 SMART GATA_3 121 173 IPR000679 GO:0006355|GO:0043565
Trre15g04059 236 ProSiteProfiles GATA-type zinc finger domain profile. 121 157 IPR000679 GO:0006355|GO:0043565
Trre15g04059 236 MobiDBLite consensus disorder prediction 72 120 - -
Trre15g04059 236 Gene3D - 123 178 IPR013088 GO:0006355|GO:0008270
Trre15g04059 236 MobiDBLite consensus disorder prediction 84 120 - -
Trre15g04059 236 ProSitePatterns GATA-type zinc finger domain. 127 152 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04059 Trre-Chr15 51124503 51125441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04059 58 236 C2C2-Gata Transcription Factor Family AT3G50870 44.770 1.46e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre15g04059 GATA 1.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04059 - - gmx:100799154 234.572