Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g04059 | ATGATGCATCATTGTTGCAGTAGCTCTCAACAAGCTTACATAATGGGAGGAACAACAACATGCACATGTGATATGTTTCATCCTCAAACCATGTTTTTCTCTAACTACCAACAACAACAACAACATCAACATCATGATGATCATTTTGACACATACTCTTACCCTACTCCTTCTTCTTCTGTTGATTGTACACTCTCTCTTGCTACACCTTCCACTCGTTTATCTGAAGATCAAGACAAACAAAACCGTCGTTCTTCCCTTACTAGTTTCTTTTGGAACAAGAATCCTTCTAAATCTAAACAAAATTCTCAAACCAAATCTAACCGAGGTAACAATATTGGTAATAACTCTAACAATGATTCTCTTCTCGCTCGTCGATGTGCTAGTTGCGACACCACTTCTACACCACTCTGGAGAAACGGTCCCCGCGGCCCAAAGTCACTATGCAATGCATGTGGGATTAGATACAAAAAAGAAGAAAGAAGAGCAAATGCTGCAACCGTTAATGCCACGTCAGCAGTAACAAACAGTGGAGTAATCGAGTCAGGGCAAGTCTACAGCAACAATTCATGGTACGCACATCAACAGAGTCAAATGTATGGAAATGAGTTACGCTTTATGGACGATTCAGATGCAGAATCAGAAAATGGAATTCCTAATTTTCTTTCTTGGAGACTTAACACAAGCCTTGTTCATGATTACACAAGATGA | 711 | 0.3966 | MMHHCCSSSQQAYIMGGTTTCTCDMFHPQTMFFSNYQQQQQHQHHDDHFDTYSYPTPSSSVDCTLSLATPSTRLSEDQDKQNRRSSLTSFFWNKNPSKSKQNSQTKSNRGNNIGNNSNNDSLLARRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAATVNATSAVTNSGVIESGQVYSNNSWYAHQQSQMYGNELRFMDDSDAESENGIPNFLSWRLNTSLVHDYTR | 236 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g04059 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 124 | 169 | - | - | |
Trre15g04059 | 236 | CDD | ZnF_GATA | 126 | 158 | IPR000679 | GO:0006355|GO:0043565 | |
Trre15g04059 | 236 | PANTHER | GATA TRANSCRIPTION FACTOR 18 | 4 | 236 | IPR044272 | GO:0003700|GO:0009908 | |
Trre15g04059 | 236 | Pfam | GATA zinc finger | 127 | 161 | IPR000679 | GO:0006355|GO:0043565 | |
Trre15g04059 | 236 | SMART | GATA_3 | 121 | 173 | IPR000679 | GO:0006355|GO:0043565 | |
Trre15g04059 | 236 | ProSiteProfiles | GATA-type zinc finger domain profile. | 121 | 157 | IPR000679 | GO:0006355|GO:0043565 | |
Trre15g04059 | 236 | MobiDBLite | consensus disorder prediction | 72 | 120 | - | - | |
Trre15g04059 | 236 | Gene3D | - | 123 | 178 | IPR013088 | GO:0006355|GO:0008270 | |
Trre15g04059 | 236 | MobiDBLite | consensus disorder prediction | 84 | 120 | - | - | |
Trre15g04059 | 236 | ProSitePatterns | GATA-type zinc finger domain. | 127 | 152 | IPR000679 | GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g04059 | Trre-Chr15 | 51124503 | 51125441 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g04059 | 58 | 236 | C2C2-Gata Transcription Factor Family | AT3G50870 | 44.770 | 1.46e-46 | 154 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Trre15g04059 | GATA | 1.9e-17 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g04059 | - | - | gmx:100799154 | 234.572 |