Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04050 ATGCAACAGAAAATCAAAATCTGTGAAGTCGAGGGGATGAAAAATGGAACAGGTAGCATATCAAAGTGGGGTGGTGAGATCAAGGACTATCGCGCAAAGTCGCACCTTGCGCTCGATGACGATGTGAATGATTTCCGGCACATTAGTCCATATTCGTGTCGAGATCAAGCCTTGCTCGACACCAGAGGTAATCAACCGGGACAATGGGAAACTCTACCACCTGAATTACTTTTGGACATAATCCGGAGGGTTGAAGAGAGTGAGACATTTTGGCCTGCGCGTGCTGTTGTTGTCTCTTGTGCTTCGGTATGTAAATCATGGAGGTCCGTGACGAAAGAGATTATCAAGAATCTTCAACAATGTGGAAAGATCACATTTCCAATTTCATTGAAGCAGCCCGGTCCCCGTGATGATCTGATGCAATGCTATATTAGGAGGAATAGAAGAAATTCTACATTCCTGTTGTACTTATGTTTGCTGCCATCGGCGAATAAGAGTAAGAAGTTGTTATTAGCCGCAAAATGGAAGAAATGGTTCGAATTTGCCATATCCTTGGCTGCAGACGATTTTTCTCAAGCCAAATGTGTTGGTAAACTGAGGTCTAATTTTTGGGGCACCAAGTTCGCTATATATGACACTCAACCTCCACATGACGCTGCAGTTCAACCAAATTTCCAGTCAAGCGAGGGATTTAATTCTAAGGTGTCACCAACAAGTGTTCCAGAATATAACCATCTTGTTAGCACCATTTCCTATGAGTGGCTCACTAAAACACCAAGACGGGTGCACTGCGTCATGAACTCTATACCTGTCTCGGCTATTCAGGAAGGGGGAAACGCTCCGATTCCAACATCATTACCTCAAATATTTGATGAACCCTTTTCTCCTTCACAAGCACTGAAGGGAAAAAGTCCAACGACAGATTCATACTCTACAAGCCGCCTATCAGAGCAACCAGGCTCATTCGAGCCCTTGATACTGAAAAACAAGGCTGCCAGATGGGATGACTGGTGCAAGAGTTGGTGCCTAGACTACATGGGTCGAGATATAAAGTCATCTGGAAGGAACTTTCAACTTGTAGCTGTTGTTGATCCGTCTCATAATGTTTCGCTTGCGGAGCAAGAAAGGGTAATCTTGCATTTTGGAAAGGTTGGAAAAGATATATTTGTCATGGACTACTCTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGACATCATTCATTTGTAACATGTACAAATCAAAATGCAAAGCTTAA 1266 0.4352 MQQKIKICEVEGMKNGTGSISKWGGEIKDYRAKSHLALDDDVNDFRHISPYSCRDQALLDTRGNQPGQWETLPPELLLDIIRRVEESETFWPARAVVVSCASVCKSWRSVTKEIIKNLQQCGKITFPISLKQPGPRDDLMQCYIRRNRRNSTFLLYLCLLPSANKSKKLLLAAKWKKWFEFAISLAADDFSQAKCVGKLRSNFWGTKFAIYDTQPPHDAAVQPNFQSSEGFNSKVSPTSVPEYNHLVSTISYEWLTKTPRRVHCVMNSIPVSAIQEGGNAPIPTSLPQIFDEPFSPSQALKGKSPTTDSYSTSRLSEQPGSFEPLILKNKAARWDDWCKSWCLDYMGRDIKSSGRNFQLVAVVDPSHNVSLAEQERVILHFGKVGKDIFVMDYSYPLSAFQAFAICLTSFICNMYKSKCKA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04050 421 Gene3D Tubby Protein; Chain A 129 410 IPR025659 -
Trre15g04050 421 Gene3D - 65 117 - -
Trre15g04050 421 PRINTS Tubby superfamily signature 395 417 IPR000007 -
Trre15g04050 421 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Trre15g04050 421 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Trre15g04050 421 PRINTS Tubby superfamily signature 195 219 IPR000007 -
Trre15g04050 421 PRINTS Tubby superfamily signature 374 393 IPR000007 -
Trre15g04050 421 CDD F-box_AtTLP-like 69 113 - -
Trre15g04050 421 MobiDBLite consensus disorder prediction 295 316 - -
Trre15g04050 421 MobiDBLite consensus disorder prediction 299 316 - -
Trre15g04050 421 SUPERFAMILY Tubby C-terminal domain-like 120 410 IPR025659 -
Trre15g04050 421 PANTHER TUBBY-RELATED 62 410 - -
Trre15g04050 421 Pfam F-box domain 69 114 IPR001810 GO:0005515
Trre15g04050 421 Pfam Tub family 130 410 IPR000007 -
Trre15g04050 421 SUPERFAMILY F-box domain 65 113 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04050 Trre-Chr15 51042686 51044395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04050 1 410 TUB Transcription Factor Family AT2G18280 45.972 1.21e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre15g04050 Tub 2e-71 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04050 K19600 - gmx:100805380 446.432