Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04049 ATGTCAATGAAAAGCATAGTAAAAAATGGAATAGGTAGCATATCAAGCAAGCGTTGGCTCTGTCGATCAAAGTCACATGTTGCTTCAGATGTAACTCCAATTGAACCTATTCAACAGGGACAGTGGGCAAATCTACCACCTGAATTGCTTTTAGATATAATCTGGCGGGTTGAAGAGAGTGAGACATCTTGGCCTGCGCGTGCTGCTGTTGTCTTTTGCGCTTTGCCCGGTCCCCGTGATCATCTGATGCAATGCTTTATTAAAAGGATCAAAGGAACTTCTACATTTCTGTTGTACTTAGGTTTGATGCCATCGGAGAATGAGAGTAATAAGTTTTTATTAGCCGCCAAAAAGATAAAAAGGCCTGCACGCATCGACTTTGTCATATCCTTGGCTGCAGACGATTTTTCTCCAGCCAGTAACAATTATGTTGGTAAACTGAGGTCTAATTTTTGGTGCAACAAGTTCACTGTATGCGACTATCAACCTCCATATGGTGCTGCAGTTCAACCAAATTGTCGAACGAGCAGGAAATTTAATTCTAAGCAGGTGTCTCCAAGAAGTGCATATCGCCATTGTGTTAGAACCATTTCCAATGTGCTGTTCCTTAGAAATCCAAGAAGTGTGCACTGCTTCATGAACTATATACCTATCTCAGCTATTCAGGAAGGGGCAAACCCCGGCCTGACTCCAGCATCTTCACCTGAAATATTTGATGAAACTTTTTCTCCTTCTCCGGCACTAAACCAAGGCTCAGTCAAGCCCTTGATACTCCAAAACATGCCTCCCTTATGGAATGAGCAGAGGAAGAGTTGGTGCCTAGACTTCAAGGGCCGTGTTAAAGTGGCTTCTGATAAAAACTTTCAACTTGTAGCCGCAGCCGCTGTTGGTCCATCTCATAATGTTTCTCCTGCGAAGCAAGAAAGGATAATCTTGCAGTGTGGAATGATTGAAAAAGATATATTCATCATGGACTACTCTTATCCAATGTCTACCTTCGAAGCCTTTGTCATCTTCTTGACATCAATGTAA 1032 0.4244 MSMKSIVKNGIGSISSKRWLCRSKSHVASDVTPIEPIQQGQWANLPPELLLDIIWRVEESETSWPARAAVVFCALPGPRDHLMQCFIKRIKGTSTFLLYLGLMPSENESNKFLLAAKKIKRPARIDFVISLAADDFSPASNNYVGKLRSNFWCNKFTVCDYQPPYGAAVQPNCRTSRKFNSKQVSPRSAYRHCVRTISNVLFLRNPRSVHCFMNYIPISAIQEGANPGLTPASSPEIFDETFSPSPALNQGSVKPLILQNMPPLWNEQRKSWCLDFKGRVKVASDKNFQLVAAAAVGPSHNVSPAKQERIILQCGMIEKDIFIMDYSYPMSTFEAFVIFLTSM 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04049 343 Gene3D Tubby Protein; Chain A 66 343 IPR025659 -
Trre15g04049 343 PRINTS Tubby superfamily signature 127 143 IPR000007 -
Trre15g04049 343 PRINTS Tubby superfamily signature 188 215 IPR000007 -
Trre15g04049 343 PRINTS Tubby superfamily signature 258 275 IPR000007 -
Trre15g04049 343 PRINTS Tubby superfamily signature 276 292 IPR000007 -
Trre15g04049 343 PRINTS Tubby superfamily signature 307 326 IPR000007 -
Trre15g04049 343 PRINTS Tubby superfamily signature 328 343 IPR000007 -
Trre15g04049 343 PRINTS Tubby superfamily signature 143 167 IPR000007 -
Trre15g04049 343 PANTHER TUBBY-RELATED 38 343 - -
Trre15g04049 343 SUPERFAMILY Tubby C-terminal domain-like 70 342 IPR025659 -
Trre15g04049 343 Pfam Tub family 76 343 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04049 Trre-Chr15 51038351 51039876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04049 1 342 TUB Transcription Factor Family AT2G18280 45.226 1.40e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre15g04049 Tub 7e-73 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04049 K19600 - tpra:123922804 489.96