Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04030 ATGGTTGATTTAGACAATGTTTCAACAGCTTCAGGAGAAGCTAGCATCTCTTCATCTGGTAATAACAACAACAACAACAACAATAATCAAACTCCAAAACCCACCAAGAAAAAAAGAAATCTTCCAGGAATGCCAGATCCAGAAGCAGAAGTGATAGCTTTATCACCAACAACTTTATTAGCAACAAATAGATTTGTATGTGAAATATGTAACAAAGGTTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACATAATCTACCATGGAAATTGAGACAAAGATCAACTAAAGAAGTTAGAAAAAGGGTTTATGTTTGTCCTGAACCAACTTGTGTTCATCATGATCCTTCTAGAGCTTTAGGTGATTTAACTGGAATTAAAAAGCACTTTTGTAGAAAACATGGTGAGAAGAAGTGGAAATGTGATAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAGTTTGTGGTTCTAGAGAGTATAAATGTGATTGTGGAACTGTTTTTTCCAGGAGGGATAGTTTTATCACACATAGAGCTTTTTGTGATGCTTTGGCTGAGGAGAATGCTAAATCTCAGAATCAAGTTGTTGTTGGGAAAGCTAATTCAGAATCTGATTCAAAGGTTTTGACTAGTGATTCATTGCCGCCGGCACCGAATCCGACGCCGGCTGCTATAACAACTCCTCAGTCAAATAGTGGTGTGTCCTCTGCTTTGGAGAATCAGAAGCTAGATTTGCCAGAAAATCCTCCGCAAATCGTAGATGAGCCAGAAGCTATTGTTACTACTACTGCTGCTGCTGTTGTTTTAAATGCGAATTGTAGTAGCAGCAGCACTAGCTCGACGAGTAACGGTTGTGCTGCTACTAGCAGTGGCGTGTTTGCAAGTTTGTTTGCTTCATCAACAGCTTCGGCTTCTGCAAGTATGCAATCTCATACACCAGTGTTCTCTGACTTAATTAGGTCCATGGGATGTCCAGATCGTTCGACAGATTTCTCAGCTCCTCCGTCGTCCGAGGCTATATCTCTTTGTCTCTCGACCAATCCTGGATCATCAATTTTCGGAACAGGAGGGCAGGAGTGTCGTCAATATGTGCCGACACATCAGCCACCAGCAATGTCTGCCACTGCGTTACTGCAGAAAGCTGCTCAAATGGGAGCTGCCGCTACTAACGCATCTTTGCTTCGCGGACTTGGAATTGTGTCGTCTTCTGCTTCCACTTCATCAGGTCAGCAAGATAGCCTGCACTGGGGTCTCGGACAAGTGGAACCGGAGGGTTCTGGTTTAGGTCCAGCAGGACTTGGACTCGGACTTCCTTGTGACGGCGATTCAGGACTAAAAGAATTAATGTTGGGGACTCCATCATTGTTTGGCCCAAAACAGACAACTCTTGATTTTCTAGGATTAGGTATGGCTGCTGGCGGCAGTGCTGGCGGAGGCTTGTCTGCACTTATCACATCAATCGGTGGCAGCGGCGGTTTGGATGTTACCGCAGCAACTGCATCCTTCGGTAATGGAGAGTTTTCTGGCAAAGATATTGGAAGGAATTCATGA 1575 0.4324 MVDLDNVSTASGEASISSSGNNNNNNNNNQTPKPTKKKRNLPGMPDPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGSREYKCDCGTVFSRRDSFITHRAFCDALAEENAKSQNQVVVGKANSESDSKVLTSDSLPPAPNPTPAAITTPQSNSGVSSALENQKLDLPENPPQIVDEPEAIVTTTAAAVVLNANCSSSSTSSTSNGCAATSSGVFASLFASSTASASASMQSHTPVFSDLIRSMGCPDRSTDFSAPPSSEAISLCLSTNPGSSIFGTGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTSSGQQDSLHWGLGQVEPEGSGLGPAGLGLGLPCDGDSGLKELMLGTPSLFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGSGGLDVTAATASFGNGEFSGKDIGRNS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04030 524 MobiDBLite consensus disorder prediction 8 36 - -
Trre15g04030 524 MobiDBLite consensus disorder prediction 201 244 - -
Trre15g04030 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 480 IPR031140 -
Trre15g04030 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Trre15g04030 524 FunFam protein indeterminate-domain 5, chloroplastic-like 119 198 - -
Trre15g04030 524 FunFam protein indeterminate-domain 12-like 44 112 - -
Trre15g04030 524 MobiDBLite consensus disorder prediction 201 222 - -
Trre15g04030 524 Pfam Zinc finger, C2H2 type 65 87 IPR013087 -
Trre15g04030 524 SMART c2h2final6 106 136 IPR013087 -
Trre15g04030 524 SMART c2h2final6 141 161 IPR013087 -
Trre15g04030 524 SMART c2h2final6 65 87 IPR013087 -
Trre15g04030 524 MobiDBLite consensus disorder prediction 1 48 - -
Trre15g04030 524 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Trre15g04030 524 Gene3D Classic Zinc Finger 119 200 - -
Trre15g04030 524 Gene3D Classic Zinc Finger 45 111 - -
Trre15g04030 524 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04030 Trre-Chr15 50769041 50771371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04030 2 524 IDZ Gene Family AT5G66730 57.895 2.46e-178 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre15g04030 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04030 K25869 - gmx:100806404 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04030 15 50769041 50771371 Trre15g04030 15 50769041 50771371 ECH