Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04024 ATGGGGACTAAGGAGGATAGCACAACTAAACCTTCTAAATTATCTACATCAACTCAGGAGGTACCGACAGTACCACCACCATATCCAGATTGGTCAAGTTCCATGCAGGCCTACTATAATCCTGGAGCTGCTCCGCCTCCCTATTATGCCTCAACTGTTGCTCCGCCAAACCCCCATCCGTATATGTGGGGAGGTCAGCATCCTATGATGGCGCCGTATGGGACTCCAGTCCCGTATCCTGCTATGTACCCTCCTGGAAATATCTATGCTCATCCTAGCATGGTTGTGACTCCAAGTGCTATGCACCAAACTACAGAGTTTGAAGGCAAGGGACCTGACGGAAAGGAAAAGGATTCATCTAAAAAATCGAAGGGTACTTCTGCGAATACATGTGCCAAAGCAGGAGAGAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCTTTTCACAAAGTGGTGAAAGTGGCTCAGAGGGTTCATCAAATGGTAGTGATGAGAACCAACAGGAATCAGCTAGAAACAAGAAGGGAGGCTTTGACCTCATGCTTGTTAATGGAGCAAACGTACAGAACAATACCACTGGACCAATTTCTCAATCTCCTGTTCCTGGAAATCCTGTTGTCTCGATGCCTGCTACTAATCTTAATATCGGAATGGATTTATGGAATGCATCTCCTGCAAGTGCTGAAGCCGCCAAAATGAGACACAATCAATCTAGTGCCCCTGGAGCTGGTGAACAATGGATGCAACAAGATGATCGTGAGCTGAAAAGACAGAAGAGAAAACAGTCTAATCGAGAGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGCTGAGTGTGAAGAGCTACAAAAGAGGGTAGAGGCGCTGGGAGGTGAGAATCGAACTCTCAGAGAAGAGCTTCAGAAACTTTCTGAGGAATGTGAGAAGCTTACATCTGAAAACAGTTCTATCAAGGAGGAGTTGGAACGATTGTGTGGGCCGGAAGTAGTTGCTAACCTTGAATGA 1008 0.4683 MGTKEDSTTKPSKLSTSTQEVPTVPPPYPDWSSSMQAYYNPGAAPPPYYASTVAPPNPHPYMWGGQHPMMAPYGTPVPYPAMYPPGNIYAHPSMVVTPSAMHQTTEFEGKGPDGKEKDSSKKSKGTSANTCAKAGESGKAGSGSGNDGFSQSGESGSEGSSNGSDENQQESARNKKGGFDLMLVNGANVQNNTTGPISQSPVPGNPVVSMPATNLNIGMDLWNASPASAEAAKMRHNQSSAPGAGEQWMQQDDRELKRQKRKQSNRESARRSRLRKQAECEELQKRVEALGGENRTLREELQKLSEECEKLTSENSSIKEELERLCGPEVVANLE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04024 335 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 260 275 IPR004827 GO:0003700|GO:0006355
Trre15g04024 335 MobiDBLite consensus disorder prediction 1 29 - -
Trre15g04024 335 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Trre15g04024 335 MobiDBLite consensus disorder prediction 104 178 - -
Trre15g04024 335 MobiDBLite consensus disorder prediction 143 168 - -
Trre15g04024 335 MobiDBLite consensus disorder prediction 108 123 - -
Trre15g04024 335 Pfam Disordered region downstream of MFMR 116 228 - -
Trre15g04024 335 Gene3D - 256 310 - -
Trre15g04024 335 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 330 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trre15g04024 335 MobiDBLite consensus disorder prediction 1 21 - -
Trre15g04024 335 SUPERFAMILY Leucine zipper domain 256 312 IPR046347 GO:0003700|GO:0006355
Trre15g04024 335 MobiDBLite consensus disorder prediction 232 246 - -
Trre15g04024 335 FunFam BZIP transcription factor 255 306 - -
Trre15g04024 335 Pfam bZIP transcription factor 254 315 IPR004827 GO:0003700|GO:0006355
Trre15g04024 335 Coils Coil 266 321 - -
Trre15g04024 335 CDD bZIP_plant_GBF1 258 308 IPR045314 GO:0003700|GO:0006355
Trre15g04024 335 SMART brlzneu 253 317 IPR004827 GO:0003700|GO:0006355
Trre15g04024 335 MobiDBLite consensus disorder prediction 227 278 - -
Trre15g04024 335 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 255 318 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04024 Trre-Chr15 50688918 50691881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04024 1 335 bZIP Transcription Factor Family AT4G36730 53.529 6.57e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre15g04024 MFMR_assoc 3.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04024 K09060 - gmx:778191 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04024 15 50688918 50691881 Trre15g04024 15 50688918 50691881 ECH