Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04023 ATGAAGATTCCAAGCAAGAAAAACAAAAGAACTGAAGACAAAGAGGGTGAAACCAACGTAGGTGATTCATATATTTCTGAAAGCAATGCTGTTGATGATTTGACTTTGGCCAAAAGTAATGATGATCAACATTTGGTTGAAAGCAATAAAAGTGAAGATGGCGAGCGGGGCAAGAAGAAAAATAAAAAGAAGAAACTGAGTGAAGAAAGCAAAGATAAGGAGTATAAGGAGTTCAAAAGGAGTGAATGTGAAGATGATAACCAAGGAAAGAAGATAAAAAAGAAGCAGGTGCTAATTGAAGGAAACACACCGAAGGAGTGTAATGACTTCAGGAGCAATGTAGATGAAGATGGCAAGCAAGATAAAAAGGTGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGCAAACATAAGGAGTTTGAAAGCAATGAATGTGAAGATGATAACGAAGGAAAGAAGAAGAAAAAGAAGCAGAAGGTAATTGAAGGAAACAACCTAGAGGAGTGTAATGACTTTAGAAGCAATGGAGATGAAGATGGCACGCAAGACAAAAAGATGAAGAAAAAGAAGAAACTAAGTGAAGAAAGCAAACATAAGGAGTTTGAAAGCAATGAATGTGAAGATGATAACCAAGGAAAGAAGATGAAAAAGAAGCAGAAGCTAATTGAAGGAAACACACTAGAGGAGTGTAATGACTTTCGAAGCAATGGAGATGAAGATGGCAAGCAAGACAAAAAGATGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGCAACCATAAGGATTATAACGAGCGCAATAGCAATGAATGTGATGATGATAACCAAGGAAAGAAGATGAAAAAAAAGCAGAAGCTAATTGAAGGAAACACACTGAAGGAGTGTAGTGACTTTAGAAGCAATGAAGGTGAAGATGATGACCAAGGGAAGAAGATGAAAAAGAAGCGGAAACTAATGGAAGGAAACACAGTTAATGAGCGTAATGACTTTATAAGCAATGGATGTGAAGATGGTGAGCAAGACAAGAAGATGAAGAAAAAGAAAAAGAAACTAAGTGATGAAGTGAAACCCAAACGAGTAACTTTTTCTGATGAAGTAGAGACGTTTTGTTGTGACGGCTTAGTGCGTGGGAAAAGGTTTACACCTGAAGAAGATGAGAAGATCAAAGCATCTGTTTTTGCCTATATAGATTCTCATGGTCTGGGCGAAGAAGGTCTAGATAAGATTCTTCATGTCAGATCACACCCTGAGCTTATAGGCTGTTGGAAAGAAATTGCACGAGTTCTACCTCATAGGCCCACCCATAGTGTGTATAACCGTGCTCATATTTTGTTGGAAAATGTTGGGAGGTGTAAGTGGACACCTGAGGAGCTTGAATTTATACGGAAGTCTTATCAGCAACATGGACCTGATTTCAGGCTAATAGCCGATACTTTGGGTAAAAGTCGAGATCAGGTAAAAGATGCGTGGCGTAGATTAAAATATGAGAAAGCAAGATTTGGACATTGGTCCCAAGAGGAGTATCAAACTTTGTATAATTTAGTAAACGAGGATCTGCGTGCAAGGTCTTTAGAGCCTTATAGAAAACAACAACATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAATTGGAAACCCGAAACAGTGCATTTTGCTGCAAGAAGTGGTATGAGGAGTTAATATCACCAATGGTTGCTAGGGGTGAATGGTGTGATACTGACGACTTCCGCTTGATAGATGCTTTATATACTTTGGATGCTTGCTGCATGGAGGAGGTAGAATGGGACGAGCTACTTGAGCATAGGTCTGGTGATGCATGCAGAAAACGATGGGATCAAATGGTCCAACATCTTGGGGAGCATGCAAGGAAGCCATTTATTGAGCAGGTTGAAGTTCTCACAAAGAGATTCTGCCCTGACTTGTTGGAAGCAAGAGAAGCCTTTGACAACAAACCTGTCATTTGTTGA 1980 0.3894 MKIPSKKNKRTEDKEGETNVGDSYISESNAVDDLTLAKSNDDQHLVESNKSEDGERGKKKNKKKKLSEESKDKEYKEFKRSECEDDNQGKKIKKKQVLIEGNTPKECNDFRSNVDEDGKQDKKVKKKKKKLSEESKHKEFESNECEDDNEGKKKKKKQKVIEGNNLEECNDFRSNGDEDGTQDKKMKKKKKLSEESKHKEFESNECEDDNQGKKMKKKQKLIEGNTLEECNDFRSNGDEDGKQDKKMKKKKKKLSEESNHKDYNERNSNECDDDNQGKKMKKKQKLIEGNTLKECSDFRSNEGEDDDQGKKMKKKRKLMEGNTVNERNDFISNGCEDGEQDKKMKKKKKKLSDEVKPKRVTFSDEVETFCCDGLVRGKRFTPEEDEKIKASVFAYIDSHGLGEEGLDKILHVRSHPELIGCWKEIARVLPHRPTHSVYNRAHILLENVGRCKWTPEELEFIRKSYQQHGPDFRLIADTLGKSRDQVKDAWRRLKYEKARFGHWSQEEYQTLYNLVNEDLRARSLEPYRKQQHGMLRDNICWEAIGHKLETRNSAFCCKKWYEELISPMVARGEWCDTDDFRLIDALYTLDACCMEEVEWDELLEHRSGDACRKRWDQMVQHLGEHARKPFIEQVEVLTKRFCPDLLEAREAFDNKPVIC 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04023 659 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g04023 659 Gene3D - 494 568 - -
Trre15g04023 659 Gene3D - 454 493 - -
Trre15g04023 659 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 445 498 IPR017930 -
Trre15g04023 659 PANTHER GB|AAC33480.1 5 658 - -
Trre15g04023 659 SMART sant 499 566 IPR001005 -
Trre15g04023 659 SMART sant 376 447 IPR001005 -
Trre15g04023 659 SMART sant 570 621 IPR001005 -
Trre15g04023 659 SMART sant 449 496 IPR001005 -
Trre15g04023 659 MobiDBLite consensus disorder prediction 133 245 - -
Trre15g04023 659 MobiDBLite consensus disorder prediction 21 36 - -
Trre15g04023 659 CDD SANT 452 494 IPR001005 -
Trre15g04023 659 ProSiteProfiles Myb-like domain profile. 566 619 IPR001005 -
Trre15g04023 659 MobiDBLite consensus disorder prediction 332 350 - -
Trre15g04023 659 ProSiteProfiles Myb-like domain profile. 445 494 IPR001005 -
Trre15g04023 659 MobiDBLite consensus disorder prediction 65 100 - -
Trre15g04023 659 ProSiteProfiles Myb-like domain profile. 495 564 IPR001005 -
Trre15g04023 659 Pfam Myb-like DNA-binding domain 453 511 - -
Trre15g04023 659 MobiDBLite consensus disorder prediction 1 350 - -
Trre15g04023 659 MobiDBLite consensus disorder prediction 255 323 - -
Trre15g04023 659 MobiDBLite consensus disorder prediction 37 59 - -
Trre15g04023 659 SUPERFAMILY Homeodomain-like 425 507 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04023 Trre-Chr15 50680010 50682085 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g04023 Myb_DNA-bind_6 9.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04023 - - mtr:112416380 710.679