Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04022 ATGAAGATTCCAAGCAAGAAAAACAAAAGAACTGAAGACAAAGAGGGTGAAACCAACGTAGGTGATTCATATATTTCTGAAAGCAATGCTGTTGATGATTTGACTTTGGCCAAAAGTAATGATGATCAACATTTGGTTGAAAGCAATAAAAGTGAAGATGGCGAGCGGGGCAAGAAGAAAAATAAAAAGAAGAAACTGAGTGAAGAAAGCAAAGATAAGGAGTATAAGGAGTTCAAAAGGAGTGAATGTGAAGATGATAACCAAGGAAAGAAGATAAAAAAGAAGCAGGTGCTAATTGAAGGAAACACACCGAAGGAGTGTAATGACTTCAGGAGCAATGTAGATGAAGATGGCAAGCAAGATAAAAAGGTGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGCAAACATAAGGAGTTTGAAAGCAATGAATGTGAAGATGATAACGAAGGAAAGAAGAAGAAAAAGAAGCAGAAGGTAATTGAAGGAAACAACCTAGAGGAGTGTAATGACTTTAGAAGCAATGGAGATGAAGATGGCACGCAAGACAAAAAGATGAAGAAAAAGAAGAAACTAAGTGAAGAAAGCAAACATAAGGAGTTTGAAAGCAATGAATGTGAAGATGATAACCAAGGAAAGAAGATGAAAAAGAAGCAGAAGCTAATTGAAGGAAACACACTAGAGGAGTGTAATGACTTTCGAAGCAATGGAGATGAAGATGGCAAGCAAGACAAAAAGATGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGCAACCATAAGGATTATAACGAGCGCAATAGCAATGAATGTGATGATGATAACCAAGGAAAGAAGATGAAAAAAAAGCAGAAGCTAATTGAAGGAAACACACTGAAGGAGTGTAGTGACTTTAGAAGCAATGAAGGTGAAGATGGTGAGCAAGACAAGAAGATGAAGAAAAAGAAAAAGAAACTAAGTGAAGAAAATAAACATAAGGAGTGTAATGAGTTCAAAAGCAATGAATTGAAACCCAAACGAGTAACTTTTTCTGATGAAGTAGAGACGTTTTGTTGTGACGGCTTAGTGCGTGGGAAAAGGTTTACACCTGAAGAAGATGAGAAGATCAAAGCATCTGTTTTTGCCTATATAGATTCTCATGGTCTGGGCGAAGAAGGTCTAGATAAGATTCTTCATGTCAGATCACACCCTGAGCTTATAGGCTGTTGGAAAGAAATTGCACGAGTTCTACCTCATAGGCCCACCCATAGTGTGTATAACCGTGCTCATATTTTGTTGGAAAATGTTGGGAGGTGTAAGTGGACACCTGAGGAGCTTGAATTTATACGGAAGTCTTATCAGCAACATGGACCTGATTTCAGGCTAATAGCCGATACTTTGGGTAAAAGTCGAGATCAGGTAAAAGATGCGTGGCGTAGATTAAAATATGAGAAAGCAAGATTTGGACATTGGTCCCAAGAGGAGTATCAAACTTTGTATAATTTAGTAAACGAGGATCTGCGTGCAAGGTCTTTAGAGCCTTATAGAAAACAACAACATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAATTGGAAACCCGAAACAGTGCATTTTGCTGCAAGAAGTGGTATGAGGAGTTAATATCACCAATGGTTGCTAGGGGTGAATGGTGTGATACTGACGACTTCCGCTTGATAGATGCTTTATATACTTTGGATGCTTGCTGCATGGAGGAGGTAGAATGGGACGAGCTACTTGAGCATAGGTCTGGTGATGCATGCAGAAAACGATGGGATCAAATGGTCCAACATCTTGGGGAGCATGCAAGGAAGCCATTTATTGAGCAGGTTGAAGTTCTCACAAAGAGATTCTGCCCTGACTTGTTGGAAGCAAGAGAAGCCTTTGACAACAAACCTGTCATTTGTTGA 1923 0.3874 MKIPSKKNKRTEDKEGETNVGDSYISESNAVDDLTLAKSNDDQHLVESNKSEDGERGKKKNKKKKLSEESKDKEYKEFKRSECEDDNQGKKIKKKQVLIEGNTPKECNDFRSNVDEDGKQDKKVKKKKKKLSEESKHKEFESNECEDDNEGKKKKKKQKVIEGNNLEECNDFRSNGDEDGTQDKKMKKKKKLSEESKHKEFESNECEDDNQGKKMKKKQKLIEGNTLEECNDFRSNGDEDGKQDKKMKKKKKKLSEESNHKDYNERNSNECDDDNQGKKMKKKQKLIEGNTLKECSDFRSNEGEDGEQDKKMKKKKKKLSEENKHKECNEFKSNELKPKRVTFSDEVETFCCDGLVRGKRFTPEEDEKIKASVFAYIDSHGLGEEGLDKILHVRSHPELIGCWKEIARVLPHRPTHSVYNRAHILLENVGRCKWTPEELEFIRKSYQQHGPDFRLIADTLGKSRDQVKDAWRRLKYEKARFGHWSQEEYQTLYNLVNEDLRARSLEPYRKQQHGMLRDNICWEAIGHKLETRNSAFCCKKWYEELISPMVARGEWCDTDDFRLIDALYTLDACCMEEVEWDELLEHRSGDACRKRWDQMVQHLGEHARKPFIEQVEVLTKRFCPDLLEAREAFDNKPVIC 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04022 640 MobiDBLite consensus disorder prediction 1 325 - -
Trre15g04022 640 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g04022 640 Gene3D - 435 474 - -
Trre15g04022 640 CDD SANT 433 475 IPR001005 -
Trre15g04022 640 Pfam Myb-like DNA-binding domain 434 492 - -
Trre15g04022 640 SUPERFAMILY Homeodomain-like 406 488 IPR009057 -
Trre15g04022 640 SMART sant 551 602 IPR001005 -
Trre15g04022 640 SMART sant 480 547 IPR001005 -
Trre15g04022 640 SMART sant 430 477 IPR001005 -
Trre15g04022 640 SMART sant 357 428 IPR001005 -
Trre15g04022 640 ProSiteProfiles Myb-like domain profile. 476 545 IPR001005 -
Trre15g04022 640 MobiDBLite consensus disorder prediction 133 245 - -
Trre15g04022 640 MobiDBLite consensus disorder prediction 21 36 - -
Trre15g04022 640 ProSiteProfiles Myb-like domain profile. 547 600 IPR001005 -
Trre15g04022 640 ProSiteProfiles Myb-like domain profile. 426 475 IPR001005 -
Trre15g04022 640 MobiDBLite consensus disorder prediction 65 100 - -
Trre15g04022 640 PANTHER GB|AAC33480.1 5 639 - -
Trre15g04022 640 MobiDBLite consensus disorder prediction 255 325 - -
Trre15g04022 640 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 426 479 IPR017930 -
Trre15g04022 640 Gene3D - 475 549 - -
Trre15g04022 640 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04022 Trre-Chr15 50680010 50682085 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g04022 Myb_DNA-bind_6 9.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04022 - - mtr:112416380 715.301