Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04003 ATGGCTTTTAATAAATTAATCAACTCCCACTTTTGGTGCTTTATTTTACTTCTTGTTATGGTCACATTTTTCACTACAAATGTTAGTTCTACAAAGCAAACTAAGATAGAAGGCATGCAAATGAATGTGATTGATCAATGTTGGAGACTCAATCCTGAATGGAGGAAACATCGACAACAACTTGTCGTTTGCTCGGTAGGATTTGTAGGAAAAATGACAAACAACATTGGTAATGACCTAATTCATTATAAAGTTACCGATCCTAGTGACGACCCTTTAAACCCAACACCTGGAACCTTGAGATATGGAGCTTCTAAAATTCAAGGTAAAGTTTGGATCACATTTCAAAAGGATATGAACATTAAGCTTGTGAAACCCTTTCTCATTAGTAGTTTCACCACCATTGATGGTCGAGGTGTCAATGTCCACATTGCTGATAATGCGTGCTTGATGATATATAAGGCAACAAACATAATCATCCACGGGATTAGGGTTCATCATTGTCGACCTCAAGTTCCTGGAATGGTGATGGGTCCCAATGGAAATATAATGCCTTTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTTCGGCTTCAAAGATTTGGATTGATCATAACACACTTTATGATTGCCAAGATGGTCTTCTAGATGTTACACGTGGTTCCACCAATATTACAATCTCCAACAATTGGTTTAGAGAGCAAAATAAGGTTATGCTTTGGACACGATGA 735 0.3769 MAFNKLINSHFWCFILLLVMVTFFTTNVSSTKQTKIEGMQMNVIDQCWRLNPEWRKHRQQLVVCSVGFVGKMTNNIGNDLIHYKVTDPSDDPLNPTPGTLRYGASKIQGKVWITFQKDMNIKLVKPFLISSFTTIDGRGVNVHIADNACLMIYKATNIIIHGIRVHHCRPQVPGMVMGPNGNIMPLGQVDGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTNITISNNWFREQNKVMLWTR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04003 244 Pfam Pectate lyase 129 241 IPR002022 -
Trre15g04003 244 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Trre15g04003 244 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Trre15g04003 244 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Trre15g04003 244 SUPERFAMILY Pectin lyase-like 33 242 IPR011050 -
Trre15g04003 244 Gene3D - 41 244 IPR012334 -
Trre15g04003 244 SMART amb_all 118 244 IPR002022 -
Trre15g04003 244 PANTHER PECTATE LYASE 18-RELATED 34 242 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04003 Trre-Chr15 50411824 50413268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04003 72 241 Polysaccharide Lyase AT5G09280 66.471 4.04e-86 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04003 K01728 - gmx:100811216 419.853