Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04002 ATGAAAGTCACTGTTGTATACAATTATTTTGGACCTAATTGCCAGCAACGCATGCCTAGAATTCGTCATGGTTATGCACATGTTGCAAATAATTTGTACATGGGATGGGTGCAATATGCAATAGGAGGAAGCATGGAACCAAGCCTTAAAAGCCAATCAAACCTCTTTATAGCGCCAAGCACGCGGAATAAGGAGGTGACATGGAGAAAAAGTAGTAACGGAATTAGAGACATGTGGGAATTTTATTCAGTTGGGGATGCTTTTGAAAATGGAGCATCCTTCATGGAAACAAAAGGTGGACAAGTAAAAAAACCGAATTACAGTCCTGAACAAAATTTTGAAGTTGCTGATGCTAAATCTGTGAGATCATTGACAAGATCATCTGGTGTGTTGCAATGCAGTAAAACCTCAATATGTTGA 420 0.3905 MKVTVVYNYFGPNCQQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSQSNLFIAPSTRNKEVTWRKSSNGIRDMWEFYSVGDAFENGASFMETKGGQVKKPNYSPEQNFEVADAKSVRSLTRSSGVLQCSKTSIC 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04002 139 Pfam Pectate lyase 2 56 IPR002022 -
Trre15g04002 139 SUPERFAMILY Pectin lyase-like 1 133 IPR011050 -
Trre15g04002 139 Gene3D - 1 132 IPR012334 -
Trre15g04002 139 PANTHER PECTATE LYASE 18-RELATED 1 136 IPR045032 GO:0030570
Trre15g04002 139 PRINTS Pollen allergen Amb family signature 17 36 IPR018082 -
Trre15g04002 139 PRINTS Pollen allergen Amb family signature 39 58 IPR018082 -
Trre15g04002 139 PRINTS Pollen allergen Amb family signature 110 133 IPR018082 -
Trre15g04002 139 PRINTS Pollen allergen Amb family signature 79 103 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04002 Trre-Chr15 50411169 50411801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04002 1 139 Polysaccharide Lyase AT4G22080 47.143 6.62e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04002 K01728 - gmx:100811216 246.128