Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04001 ATGGTTTCTTCCTCCATTCCATCTCACACACTATTTCTTGCACTCATGTTCTTTTCTGCCATCCATATGCTACTTCAATTGCCACAAACCAATGGAACAAACTTCTCATATGTTGCATACTCTGCTCAGTCTCCAAATTTTTTAACCCTCACAAGCATATCTGATATATTTGACACCAGTCCTCTATCCATTGCAAGAGCAAGCAACATAAAAGATGAAAATATGAATCTCATTCCAGGACAGCTTTTACTGGTACCTATAACTTGTGGTTGCAGTGGAAATGGAAACAACTCTTTTGCCAATATCTCACACTGGATCAAACAAGGTGAAAGTTTCTATTACCTTTCAACCATTTCATATCAGAATCTCACCAATTGGATGACAGTGGAAGATTCAAATCCAAATCTGAATCCATATATGTTGACAGTAGGCACCAAAGTAGTCATTCCTATATTCTGTAGCTGCCCTTCAAAAGGGATAGAGTACTTGATTACTTATATATGGAAGCCTAATGACAATCTTACCCTTGTAGCTTCCATGTTTGGTGCATCACCACATGACATAATCACTGCAAATGCAAACAAATTTGGTCAAAACTTCACTGCTGCAGCAAACCTTCCAGTTTTCATCCCAGTGAAAAATTTACCAGCTCTTCCACAATTATATTCTTCACTTGAAAGAAAGAGAAGCAATCATTTTCATATTATCATGTCCATTGGTATGAGTCTAGGATGCACTCTTCTGATTTCACTATCATTATTACTTGTTTATGTGTATTGTTTGAGGAAAAGAAAGGCTTGTGAGAATAAGTGTGTGCCTTCTAAGTTAATTTCTGAAGTTTCTAACTATGTAAGTAAGCCAGCAGTGTATGAAGTTAATATGATTATGCAAGCTACGATGAACCTCAATGAACGGTGTAGGATAGGGAAATCGATGTACAAAGCTAAAATAGATGGTCATGTTTTAGCTGTGAAAAATGTAAAGGAAGATATCACAGTCACAGAAGAGTTAATGATTCTACAGAAAGTAAACCATGCAAATCTTGTGAAACTAATTGGTGTTTCTTCAGGATATGATGGTGTTAATCACTTCCTTGTCTACGAATACGCCGAAAATGGATCTCTTTATAACTGGTTGTTCTCTGAGTTTTTCACTCTTAGTTGGAATCAGAGGTTAAGTATAGCAATTGATGTTGCAATTGGTCTGCAATATATGCATGAACACACACAACCAAGTATAGTCCATAGGAACATCAAATCAAGTAACATTCTTCTTGACTCAAACTTTAAGGCCAAGATATCAAATTTTTCTGTTGCAAGAACTACAAAGGGTCCTATGATAACAAAAGTTGATGTTTTTGCTTATGGGGTGATTCTTTTGGAGTTAATAACAGGTAAGAAGTTTTTGTCGTGTAGCGAAAATGCTGAGGTGAATATATTGTTGAAAGATATTAAGGGAGTTTTTGATATAGAAGAAAAGAGAGAGGAAAAGGTTAGAAAATGGATTGATCCTAAGTTGGGGAGTTTTTATAATGTTGTTGAAGCTATGAGTTTGTTCTCTTTGGCTATGAATTGCATAAAAGAACAACTTTTGTTAAGACCAACTATGGGAGAAATTGTTCTTAGCCTTTCTCTTCTCACTCAACACTCTCCTACTTTGTTAGAAAGGTCTTGTAATTATGGATTAGATGTTGAGGTTATTACAGGAATGGTTAATTCCATCACAGCTCGTTGA 1734 0.3576 MVSSSIPSHTLFLALMFFSAIHMLLQLPQTNGTNFSYVAYSAQSPNFLTLTSISDIFDTSPLSIARASNIKDENMNLIPGQLLLVPITCGCSGNGNNSFANISHWIKQGESFYYLSTISYQNLTNWMTVEDSNPNLNPYMLTVGTKVVIPIFCSCPSKGIEYLITYIWKPNDNLTLVASMFGASPHDIITANANKFGQNFTAAANLPVFIPVKNLPALPQLYSSLERKRSNHFHIIMSIGMSLGCTLLISLSLLLVYVYCLRKRKACENKCVPSKLISEVSNYVSKPAVYEVNMIMQATMNLNERCRIGKSMYKAKIDGHVLAVKNVKEDITVTEELMILQKVNHANLVKLIGVSSGYDGVNHFLVYEYAENGSLYNWLFSEFFTLSWNQRLSIAIDVAIGLQYMHEHTQPSIVHRNIKSSNILLDSNFKAKISNFSVARTTKGPMITKVDVFAYGVILLELITGKKFLSCSENAEVNILLKDIKGVFDIEEKREEKVRKWIDPKLGSFYNVVEAMSLFSLAMNCIKEQLLLRPTMGEIVLSLSLLTQHSPTLLERSCNYGLDVEVITGMVNSITAR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04001 577 ProSiteProfiles Protein kinase domain profile. 278 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04001 577 Pfam LysM domain 106 150 IPR018392 -
Trre15g04001 577 Pfam LysM domain 49 86 IPR018392 -
Trre15g04001 577 Gene3D Phosphorylase Kinase; domain 1 275 369 - -
Trre15g04001 577 Gene3D Transferase(Phosphotransferase) domain 1 445 559 - -
Trre15g04001 577 Gene3D Transferase(Phosphotransferase) domain 1 370 444 - -
Trre15g04001 577 Pfam Protein tyrosine and serine/threonine kinase 323 442 IPR001245 GO:0004672|GO:0006468
Trre15g04001 577 SUPERFAMILY Protein kinase-like (PK-like) 312 544 IPR011009 -
Trre15g04001 577 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 36 550 - -
Trre15g04001 577 ProSiteProfiles LysM domain profile. 38 85 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04001 Trre-Chr15 50406129 50407862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04001 68 546 Receptor kinase-like Gene Family AT3G21630 30.812 8.20e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre15g04001 PK_Tyr_Ser-Thr 2.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04001 - - vra:106777834 610.527