Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04000 ATGGACCAAGCCGAATTAACCACCGATCAGGTTCTGAATAGGGATATCCCATGGGAAACCTACATGTCCACCAAGCTGATTTCTGGAACAAGCCTTCAGCTCTTAAGGCGTTACGATCATCGATCAGAAAGTCAGAGAGCACAGTTGCTTGATGATGATGGTCCGGCTTATGTTCGCGTGTTTGTTCGTGTTTTGCGCGATATTTTCAAGGAAGATACTGTTGAGTATGTTTTGGCTTTGATAGATGAAATGCTGACAGCGAACCCGAAAAGAGCTAGACTGTTTCATGACAATGCCCTTGCAGATGATGATACTTATGAGCCTTTCCTAATTGCGGTTTGGTACCAGTTTTGGTTTAGTTGCAATTCTGCACATGTTTTGTTTCAGTTGCAGTTTGGTACTAGTTGTCTCAGTTGTGCTTTGGTATTGGTTCTGACTCGGTTGCACTTTGCTATTGATCCTGTCTCAGTTATGGTTTGGCTAATATTGCTCCGGAAAGGAAATTGGTTCGTACAAGAGAAAAGTTGTAAGATCCTTGCTTTAATAGTTAGTGTCAGGCCAAAAAATCAGAGCGGCGTTGCATCAAATGGAGAAGCTTCAAATGAAAAGAAACCATTTACCAGCATTGATGATGTTTTGATTGGATTGGTAAAATGGCTTTGTGAGCAGCTGAAGAAACCTTCTCATCCTACTCGTGGAGTTCCAACTGCTATCAATTGCCTATCAACTCTACTTAAGGAACCTGTAGTTAGGTCTTCCTTTGTTCAAGCTGATGGGGTCAAGTTGCTTGTGCCACTGATTTGTCCAGCATCCACTCAACAATCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCATATTATGAGCCCGCAATTGAATATTTGGCTACTTCAAGGACCCTTCCCAGACTGATTGATGTTGTTAAGAGTTCTACAAAAGAAAAGGTTGTTAGAGTCGTTGTCTTGACACTTAAAAACTTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGATCTTCAGCTGCCACAAGTTGTTCAAAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGATGCACTGAACTCTTTGGAAGAAGGGCTTAAGGATAATATCAAGAAACTAAGCTCTTTTGATAAGTACAAGCAAGAAGTTCTTCTCGGCAATCTGGATTGGTCTCCCATGCACAAAGATCGCATATTTTGGCGGGAAAATATAACCAATTTTGAAGAGCATGATTTCCAGATTCTAAGGGTCCTATTAACAATTTTGGACACATCCAATGATCCAAGGACTCTAGCTGTTGCTTGCTTTGACATTTCACAGTTCATCCAGTGCCATCCGGCTGGGCGGATCATTGTGACAGACCTTAAAGCCAAGGAACGAGTGATGAAACTAATGAATCATGAGAGTGCTGAGGTAACTAAAAATGCACTGCTCTGCATCCAACGACTTTTCTTGGGTGCAAAGTATGCGAGCTTCTTGCAGGTCTAG 1512 0.4187 MDQAELTTDQVLNRDIPWETYMSTKLISGTSLQLLRRYDHRSESQRAQLLDDDGPAYVRVFVRVLRDIFKEDTVEYVLALIDEMLTANPKRARLFHDNALADDDTYEPFLIAVWYQFWFSCNSAHVLFQLQFGTSCLSCALVLVLTRLHFAIDPVSVMVWLILLRKGNWFVQEKSCKILALIVSVRPKNQSGVASNGEASNEKKPFTSIDDVLIGLVKWLCEQLKKPSHPTRGVPTAINCLSTLLKEPVVRSSFVQADGVKLLVPLICPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVVLTLKNLMSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLDALNSLEEGLKDNIKKLSSFDKYKQEVLLGNLDWSPMHKDRIFWRENITNFEEHDFQILRVLLTILDTSNDPRTLAVACFDISQFIQCHPAGRIIVTDLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04000 503 SMART arm_5 453 493 IPR000225 GO:0005515
Trre15g04000 503 SMART arm_5 246 291 IPR000225 GO:0005515
Trre15g04000 503 SMART arm_5 292 333 IPR000225 GO:0005515
Trre15g04000 503 SUPERFAMILY ARM repeat 8 153 IPR016024 -
Trre15g04000 503 Gene3D - 4 382 IPR011989 -
Trre15g04000 503 Pfam V-ATPase subunit H 380 492 IPR011987 GO:0000221|GO:1902600
Trre15g04000 503 Pfam V-ATPase subunit H 161 374 IPR004908 GO:0000221|GO:0046961|GO:1902600
Trre15g04000 503 Pfam V-ATPase subunit H 4 111 IPR004908 GO:0000221|GO:0046961|GO:1902600
Trre15g04000 503 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 502 IPR004908 GO:0000221|GO:0046961|GO:1902600
Trre15g04000 503 PIRSF V-ATP_synth_H 156 502 IPR004908 GO:0000221|GO:0046961|GO:1902600
Trre15g04000 503 PIRSF V-ATP_synth_H 1 129 IPR004908 GO:0000221|GO:0046961|GO:1902600
Trre15g04000 503 Gene3D - 395 495 IPR038497 -
Trre15g04000 503 SUPERFAMILY ARM repeat 170 493 IPR016024 -
Trre15g04000 503 FunFam V-type proton ATPase subunit H 394 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04000 Trre-Chr15 50399949 50405068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04000 1 502 Primary Pumps ATPases(2) AT3G42050 71.116 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04000 K02144 - gmx:100788723 805.053