Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03991 ATGGGAATAGCAACAACACAATCATCAATTCCTTCAACTTTCTCAAATTCATCAAACACTTACCAATATCATAATTCCTTTTTTAATTCAATCTTACAAAAGTCTCAAAACTCAAACAATTCTATGTCACAAGATTATCATCACGGCCACCACCAGAACCACCACCAACAACAAGGAATCTTCAACTTCTCGAATGGATTCGAGAGGTCGAACACTCCATTAGAAAACAACAATTCACCAAACCACCAACAACAAATTCAAAGAGACAAAGTGAGATTACATGGCTTCGACTCACAACAACAACAACCACCACCACCACAACCGTCACTAATAGGCGGCGGTATAGAAGAAGAACAAGAAGCTCTCCCGGTTTACGAAACAACCGGAATGTTGTCCGAGATGTTCAATTTCCCTCACGGCGCCTCGTCTGCAGCAGAATTATTAGAACAACAACAACAATTGGCAGCAACAAGAACAACACCACCACCACCACAACATGGAATAGCCAATTCCAATGACTGGTACGGTAACAGACAATCAATTTTAACAGATTCAAAAAATCATCATCATCATAATAATAATAATAATAACCGTGACAGTAGCAGCAGCAACAGCAGCATATTTCATCATCAGATGTCAAACATTAATGCTGAGTCAGCAGCTGCCATGCAGCTTTTTCTCATGAATCCACAAACCACCAGATCCCCTTCTCCAACACCACCATCTACTAATTCTTCTACTCTTCACATGTTACTTCCAAATCCTTCAACTACAAATCTTCAAGGTTTTAACACCGGCGGAACGGCCGGTGGGTCATTTGGTCAATTCACATGGGGACAAGAAGGAGGAGGAGCAACAAGTCATCATCAACTCAACAACAACCAAACTGAGATAGCAAGTGTTGTTGAAGGACAAGGTCTTTCATTGTCTTTATCTTCTTCCTTACAACAACAACAACAACATCATCATTCAGATGAATTAAGAATGGGTGACCCTGCTGGTTTTTTATATTACAATCAAGGAGCAGGAACATCTTACAAGAATCTTGGTGGTGTTCATCATCATTTACAAGGAAGTGGATTAGGACAAATTAATCATATTCATCATGGACATGTTGGATTTGGTTCATCATCTTCTCCTTCTTCTTTAGGTGTTGTTAATGTGTTGAGAAATTCAAAGTATGTTAAAGCTGCTCAAGAATTGCTTGAAGAGTTTTGTAGTGTTGGAAGGGGTCAATTCAAGAAGAGTAAATTTAGTAGACAATTATCAAACCCTAATTCAAATCAAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTTCTTCATCTTCTTCAAAAGATGTTTCACCTTTGTCACCTGCTGATAGGATTGAGCATCAAAGAAGGAAGGTCAAACTTCTAACAATGCTTGACGAGGTGGATAGAAGATACAGTCACTACTGTGAACAAATGCAAATGGTGGTGAATTCATTTGACTTAGTAATGGGGTATGGTGCTGCAGTTCCATACACAGCACTAGCACAAAAAGCAATGTCACGCCACTTTCGTTGTTTAAAGGATGCAATAACAGCACAGTTGAAACACAGTTGTGAGTTATTGGGAGAGAAAGATGGTGTGGGGACATCAGGTTTGACTAAAGGAGAGACACCAAGACTTAAACTTCTTGAACAAAGTTTAAGACAGCAAAGAGCGTTTCATCAAATGGGAATGATGGAACAAGAAGCATGGAGACCACAAAGAGGTTTGCCTGAACGTTCTGTCAATATTTTGAGAGCTTGGCTCTTTGAGCATTTCCTACACCCGTACCCGAGTGATGCAGATAAGCATCTCTTAGCAAGACAGACTGGCCTTTCCAGAAATCAGGTATCAAACTGGTTCATTAATGCTAGAGTTCGTTTGTGGAAACCCATGGTAGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAAGGATCATCAGAAGGAGATCAAGAAGAAGATAGAGAAAATAACAACAAAAATATTCAAAGCAGTACAAGCAACAACAACATCACTAGTGGTCACATATCTACAAATATTGCACAAACTTCAACACCCTCTTCAACAACAACACCACAACCTACTAGTAACAACAAGAGATCCAACAATATTATTATCAATGCCAATGAAAATGACCCATCACTTACACCAATAATAAATAATAGACAACCCTTCTCCGAAAACCAAGCCGCCACCCAAAAAACCACTGTATCTGAGGTGGCGCCACCTATCTCCGATTCAATGGCTATTGATGACACGTGTCGACATGGCAGCTTTGTTACTGCGGATTATGGGTCTACCTCTGCTGACACACTTATCAGATTTGGAACCACTACTTCTGGTGATGTGTCACTCACTTTAGGGCTACGTCACGCCGGAAATTTGCCAGACAAAACATCACCACCTTTCTCTCTTACAGACTTTGGAGGCATTTAA 2454 0.4034 MGIATTQSSIPSTFSNSSNTYQYHNSFFNSILQKSQNSNNSMSQDYHHGHHQNHHQQQGIFNFSNGFERSNTPLENNNSPNHQQQIQRDKVRLHGFDSQQQQPPPPQPSLIGGGIEEEQEALPVYETTGMLSEMFNFPHGASSAAELLEQQQQLAATRTTPPPPQHGIANSNDWYGNRQSILTDSKNHHHHNNNNNNRDSSSSNSSIFHHQMSNINAESAAAMQLFLMNPQTTRSPSPTPPSTNSSTLHMLLPNPSTTNLQGFNTGGTAGGSFGQFTWGQEGGGATSHHQLNNNQTEIASVVEGQGLSLSLSSSLQQQQQHHHSDELRMGDPAGFLYYNQGAGTSYKNLGGVHHHLQGSGLGQINHIHHGHVGFGSSSSPSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKSKFSRQLSNPNSNQGGGGGGGGGGASSSSSKDVSPLSPADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMQMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGVGTSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGSSEGDQEEDRENNNKNIQSSTSNNNITSGHISTNIAQTSTPSSTTTPQPTSNNKRSNNIIINANENDPSLTPIINNRQPFSENQAATQKTTVSEVAPPISDSMAIDDTCRHGSFVTADYGSTSADTLIRFGTTTSGDVSLTLGLRHAGNLPDKTSPPFSLTDFGGI 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03991 817 CDD homeodomain 576 637 IPR001356 GO:0003677
Trre15g03991 817 ProSiteProfiles 'Homeobox' domain profile. 573 636 IPR001356 GO:0003677
Trre15g03991 817 Pfam Associated with HOX 388 523 IPR006563 -
Trre15g03991 817 Pfam Homeobox KN domain 593 632 IPR008422 GO:0003677|GO:0006355
Trre15g03991 817 MobiDBLite consensus disorder prediction 230 254 - -
Trre15g03991 817 MobiDBLite consensus disorder prediction 666 707 - -
Trre15g03991 817 SMART prehox3 383 524 IPR006563 -
Trre15g03991 817 MobiDBLite consensus disorder prediction 36 88 - -
Trre15g03991 817 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 206 662 - -
Trre15g03991 817 SMART HOX_1 576 640 IPR001356 GO:0003677
Trre15g03991 817 MobiDBLite consensus disorder prediction 55 86 - -
Trre15g03991 817 FunFam BEL1-like homeodomain protein 4 579 641 - -
Trre15g03991 817 MobiDBLite consensus disorder prediction 417 431 - -
Trre15g03991 817 Gene3D - 579 641 - -
Trre15g03991 817 MobiDBLite consensus disorder prediction 151 206 - -
Trre15g03991 817 SUPERFAMILY Homeodomain-like 578 643 IPR009057 -
Trre15g03991 817 MobiDBLite consensus disorder prediction 646 707 - -
Trre15g03991 817 MobiDBLite consensus disorder prediction 417 457 - -
Trre15g03991 817 MobiDBLite consensus disorder prediction 151 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03991 Trre-Chr15 50209745 50219376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03991 383 815 Homeobox Transcription Factor Family AT2G23760 54.004 3.27e-148 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre15g03991 POX 5.5e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03991 - - mtr:11411247 1128.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03991 15 50209745 50219376 Trre15g03991 15 50209745 50219376 ECH
Trre15g03991 15 50209745 50219376 Trre9g00953 9 7345398 7354600 ECH
Trre9g00953 9 7345398 7354600 Trre15g03991 15 50209745 50219376 PCT