Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03988 ATGGAAAAACTGATTTGCATGGAAAATTCTGAATATGATATAATGAAACTTGATGCTGAATCTAGTGATGATTCATTACTTGTAATGCAAGTACCAGCTCAGGTTGAAAACCAAGTTCAACTCCTAGAGAATGGTAATGATAATGGTCTGGTAGAAAACCAAGTGCAAGAAGAGAATGAGGATGTTAATGATAATGGTCAGGTAGAGAATGAGGATGTTAATGTTAATGGTCAGGTAGAAAACCAATTGCAAGAAGAGAATGAGAATGTTAATGGATTGGCTATTCAAATATTTGAAGAACCTGGTACTAAGGAGAGTAGTACTGGTACTACAAATCGACAATGCAGAGCGTATATCGAAGCCAAGGGAAGGCAGTGCGCGAGAACGGCAATTAGAAATGATATATACTGTTGTGCGCATTTCTCAAATAAAAAAGGGAAACGTGTTGAAGTTCATACTCCAATGTGTGGAGGTATAACTGTATCCGGTACTAGATGTAAGCATCGTTCCCTTCGTGGACATGCATTCTGCAAGAAACATCTCCGCAATGTAAAGAAGGGCCAAACGTCAAATTCAAAGCGTCGCACTCGGAAGAGGAAATTTGAAGAAAACTGCACTGATATGGTCTTGGCACATCAGGAAATTCCATTAGAAATCAACCCGGTGACAGTCATCAACAAGGATGATTCTTTCGCGGCAAGGAACATCATAGGTGAAACTCTTATGCTTTCCAGTACTGATGAAATTAAGGCGCTTCAGTGGATAGGCTCGCCTCACCGTGGCAACGATCATAGTGACGACTCTTGTTTCGATACTGAGAATGGTTTCAAGTGTAAGATTTGCTTTGAAGAATTTTCTAATGGTCAAACACTTGGCAACCATTGGATGGAAAATCATGAAAAAGAAGCAAAGTCGTTATTCAGAAGCTATGCTTGTGCAATTTGCCTCGACACATTCAAGAACAAAAAACTAATGGAAACTCATGTTCATGAGAGACACCGTGTGCAGTTTTTCGAGCATTCTGTACTTTTAATATGTATCCCTTGTGGTAGACATTTTGAAAATATGAATGAATTGTGGCTACATGCTATGTCATCTCACCCTGCTGAATTGAGACTGTCGAAAGCTCCTGAGCAACTGACTTTATCTACCGGCGATGATGATTCTCTTAAAATGATTGAGTATGGAAACGAAGCTTCTTTGAACAATAGTTCCAAGACTCCAAGTGGTTTACAGAAGTTATTCTGCAGGTTTTGTGGTTTGAAATTTGATTTACTGCCTGATCTCAATCACCATCGTCAAGCTGTTCATATGGAGCGCAATGTACCTAGTTGGGTAGAAGCATCAAATAGGTTCGAGAGAAGGGCTAGATCTAATCTGAATAGAAGAAGTCGTGCAAAGAAGACTGAACCTCAGCCTAATAGTCTTGATATTTTATCATCGACTGTTTGCGCTGAATGCTGCCAAGACAGTCTCGAGGCCACACTTCAAGCAAAATATGGATATTTGCCGGAAAGGCTGTATTTGAAGGAACCAAAACTTTGCGGTGATTCGGCATCAAAGTCCATTTGA 1572 0.3995 MEKLICMENSEYDIMKLDAESSDDSLLVMQVPAQVENQVQLLENGNDNGLVENQVQEENEDVNDNGQVENEDVNVNGQVENQLQEENENVNGLAIQIFEEPGTKESSTGTTNRQCRAYIEAKGRQCARTAIRNDIYCCAHFSNKKGKRVEVHTPMCGGITVSGTRCKHRSLRGHAFCKKHLRNVKKGQTSNSKRRTRKRKFEENCTDMVLAHQEIPLEINPVTVINKDDSFAARNIIGETLMLSSTDEIKALQWIGSPHRGNDHSDDSCFDTENGFKCKICFEEFSNGQTLGNHWMENHEKEAKSLFRSYACAICLDTFKNKKLMETHVHERHRVQFFEHSVLLICIPCGRHFENMNELWLHAMSSHPAELRLSKAPEQLTLSTGDDDSLKMIEYGNEASLNNSSKTPSGLQKLFCRFCGLKFDLLPDLNHHRQAVHMERNVPSWVEASNRFERRARSNLNRRSRAKKTEPQPNSLDILSSTVCAECCQDSLEATLQAKYGYLPERLYLKEPKLCGDSASKSI 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03988 523 ProSitePatterns Zinc finger C2H2 type domain signature. 312 333 IPR013087 -
Trre15g03988 523 ProSitePatterns Zinc finger C2H2 type domain signature. 346 367 IPR013087 -
Trre15g03988 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 344 372 IPR013087 -
Trre15g03988 523 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 464 518 - -
Trre15g03988 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 304 IPR013087 -
Trre15g03988 523 Coils Coil 76 96 - -
Trre15g03988 523 ProSitePatterns Zinc finger C2H2 type domain signature. 416 437 IPR013087 -
Trre15g03988 523 SMART c2h2final6 276 299 IPR013087 -
Trre15g03988 523 SMART c2h2final6 310 333 IPR013087 -
Trre15g03988 523 SMART c2h2final6 414 437 IPR013087 -
Trre15g03988 523 SMART c2h2final6 344 367 IPR013087 -
Trre15g03988 523 Pfam Zinc finger C2H2-type, 3 repeats 312 438 IPR040689 -
Trre15g03988 523 Pfam CCCH zinc finger in TRM13 protein 113 140 IPR021721 GO:0008168
Trre15g03988 523 ProSitePatterns Zinc finger C2H2 type domain signature. 278 299 IPR013087 -
Trre15g03988 523 Gene3D Classic Zinc Finger 271 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03988 Trre-Chr15 50143999 50145570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03988 215 517 C2H2 Transcription Factor Family AT2G23740 29.708 1.58e-37 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre15g03988 zf-C2H2_3rep 2.5e-48 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03988 - - tpra:123922793 706.442