Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03987 ATGGAAAAATTAATTTGCATGGAAAATTCTCAATGTGATATAATGAAACTAGATGATGAATCTAGTGATGATTCATTACTTGTAATGCAAGTACCAACTCAGGTTGAAAATGAAGTTCAAGTGCAAGAGAATGGTGATTTTATTGGTCAGGTAGAAAACCAAGTTGAAGTTCAAGAGAATGATGTCAATGGTCAGGTTGAAAACCAAGTTCAAGTGCAAGAGAATGTTCATAGGGTGGCAGTCAATCCTGTAGATTCTGAAATCTTGTCTAGCAATGGATTGACTATTCAAATATTTGAAGAACCTGATTCTATATATCGACAATGCAAAGCGTATATCGAAGCCAAGGGAAGGCAGTGTGCGAGAATGGCAATTAGTAATGATATATACTGTTGTGCGCATTTCTCAAGTAAAAAAAGAAAATGTGTTGAAGTTTGTACCAACAACAAAGAGGAAATAAGTTTAACTACTAACCAATATTTTCATGGTGAACCATCAAGAAACAACAACAAAGAACAATTAACATTGTCATTTTATGAATGGTTGGAGGTTGATGACCCTGTGGCTGTGTGGTTCAAGCTTGAGTGTGGAGAGAAGTGGAATGCAGGCATCAAATGTGCAAGGGCTGATTGGCCACTATCAATTATAAGAGGCAAACCAACTAATGATAATCAGAACAAATATTTTGTCATTTTTTCTCCAGAAACAAGGAAATATTTATGGGTTGATATGCTTCTTGTTCAATTAATTCGTGAGTTTCCTCAACCCATAGCATATGAAACTCATCAAGATGGAACTGAAATTGTACAAGACTTCACTATTGCGCGAAAATTTATAATGCAAAAGCTTGCCGGTGACATGCTTCATCTTGTGCATCTAATTCATTATAATGCTTTGATAGAATCTGCTCGACATGTGATTGTTTGGAAGCAGTTTGGTATGGAAGCATATAATTGTCACACTTATTCAGAACTTGGAAGAATGGTTAAGAAGCTGCAAAATGTAAGTTCCAATTCCTAA 1020 0.3549 MEKLICMENSQCDIMKLDDESSDDSLLVMQVPTQVENEVQVQENGDFIGQVENQVEVQENDVNGQVENQVQVQENVHRVAVNPVDSEILSSNGLTIQIFEEPDSIYRQCKAYIEAKGRQCARMAISNDIYCCAHFSSKKRKCVEVCTNNKEEISLTTNQYFHGEPSRNNNKEQLTLSFYEWLEVDDPVAVWFKLECGEKWNAGIKCARADWPLSIIRGKPTNDNQNKYFVIFSPETRKYLWVDMLLVQLIREFPQPIAYETHQDGTEIVQDFTIARKFIMQKLAGDMLHLVHLIHYNALIESARHVIVWKQFGMEAYNCHTYSELGRMVKKLQNVSSNS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03987 339 Pfam CCCH zinc finger in TRM13 protein 107 134 IPR021721 GO:0008168
Trre15g03987 339 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 33 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03987 Trre-Chr15 50130251 50132305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03987 165 335 C2H2 Transcription Factor Family AT2G23740 45.614 7.12e-47 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03987 - - tpra:123922793 393.275