Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03978 ATGAAGCGGAAAACACACAAATCCAACAATCAGAGTCATATATTCATAGAGTGGATACCTGATGGTTATATTGCTATGGTTATCATGAAAAACTTTCAACAATATCGGCATATTGTTGCACCCGGCTGCCAACGAGTCCTCCATTGTTGCAAAGGTGGATCATGGAGCTCTTTTCTCCAAGATTTCAGCAACATTGTTGCTGGATTTGAAATTACAGTTGGTAGGGCCGGGGCATCCAAAAAAACAGTGAAACTCCCTCAACATTTCAAACTGAAAGCACCTGGACCCGGTTATAGTTGTGGGCCGGCAAAAATTGTGCAACCAACACAATTTGTTAAACCCGACGCAACGAGAGTGCTCCAAGCACACATGACTTGGAGCGTTACGTGCACGTACTCTCAATTTTTAGCTAAGAGAAGTCCGACGTGCTGCGTTTCATTGTCGTCATTTTACAACCAAAACTTGGTTCCCTGCTCAACTTGTGTATGCGGTTGCCAGAGCAATTCATCTCAATCAGGAAACTGTATAGATCCAAATGCACCACATTTTGACTCAATTGTTGTCGGATCACCTTTAGGGCAATGTACTAGCCACATGTGTCCAATTCAAGTTCATTGGCACATCAAAGCTAGCTACAAGGAATATTGGCGCGTAAAGGTGACTCTCACCAACTTCAACTACCATTTGAATTATTCCGACTGGAATTTGGTAGTTGAACACCCCGGCCTGAACGGTCTGAGTCAAGTATTTAGCTTCAACTATAAACCATTAATTTCTTATGGTTCAATAAATGACACTGATATGTTTTTTGGTGTCAAATTTTTTAATGATATACTAAATGAAGTCGGAACGGGTGGATATGTCCAAACCGGAATTCTTCTTCAAAAGAACAAGGAAACCTTCACAATTCGGCCAAGGATGGGCATTTCCTAG 933 0.4169 MKRKTHKSNNQSHIFIEWIPDGYIAMVIMKNFQQYRHIVAPGCQRVLHCCKGGSWSSFLQDFSNIVAGFEITVGRAGASKKTVKLPQHFKLKAPGPGYSCGPAKIVQPTQFVKPDATRVLQAHMTWSVTCTYSQFLAKRSPTCCVSLSSFYNQNLVPCSTCVCGCQSNSSQSGNCIDPNAPHFDSIVVGSPLGQCTSHMCPIQVHWHIKASYKEYWRVKVTLTNFNYHLNYSDWNLVVEHPGLNGLSQVFSFNYKPLISYGSINDTDMFFGVKFFNDILNEVGTGGYVQTGILLQKNKETFTIRPRMGIS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03978 310 PANTHER PROTEIN COBRA 44 304 IPR006918 GO:0010215|GO:0016020
Trre15g03978 310 Pfam COBRA-like protein 45 133 IPR006918 GO:0010215|GO:0016020
Trre15g03978 310 PIRSF COBRA 11 48 IPR006918 GO:0010215|GO:0016020
Trre15g03978 310 PIRSF COBRA 43 308 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03978 Trre-Chr15 49952594 49954688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03978 16 304 COBRA Gene Family AT5G60920 49.143 7.24e-124 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03978 - - gmx:100783820 399.053