Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03968 ATGTTCTATCATCACAAGTCAAATCTTTATATTCTCATCATCATCATCATCATCATCATCACAATCTTCACTACAGTAATAACTGCTGATCAAAACAAAAATAACTGCAATCAAAGATGCGGTGAACAAATTGTAAATTATCCGTTCGGATTCTCCGATGACTGCGAAATTAAACTAAACTGCAGCATCAACAAAGAACTCAAAATTGATGAGTTAAAAGTTCAAGAAGTGAATTCTGATAGCATATTCATATCATTACCAGCAAAATGCAACCGTAGTACAAGTTTCATAGAGCCACTTTTCGGCAAAAACTTCGCTCCAACATGGAAAAACACGTTCCTTGTACAGAAATGTAATTCAAATCTTAGTGGTTGTGTTATTCCACCTTCGATTTTCATTGGAACAAACATAAATGTTGAAGGTTGTGATGATAAAACAAGAAGTGATAACATCACTTGCTTTACGCAATCGCAGCGTAAAAGAACGCGCGAGCACGAGGATGTTCTTACGGTTGATGATTGGAAAATAAATGGATGCAAATTCTTGTTTTCTTCTATTGCTGTTGATAGCAGTAAAATCAAAGAGGTACCAATTCAGTTTCAGGTGATTGAGTTGGGGTGGTGGCTTGAAGGTACTTGTGGATGTTCTGATGATGCTAATTGCACGAAGGTTCATTTTGACGGAGATAAACAGGGCTTCCGGTGTCGTTGCCGTGAAGGTTTCGTCGGAGATGGATTTGTCAACGGTATTGGTTGCCGGAGAGTTTCTCATTGCAGACCTTCAACATTTGGGTCTAGCAAATGTGGAAAAACACTCAGAATTGGTTTGCTTATTGGAGTGATCCTAGTTGGAGCCTCCGTGACGGCTGCCCTAGCAATGCTATGCTACTTCGCCAAGCGCCGTTCCACATGGCTGACAAAACAATTGACGGTAAAGCGCCTTTTAAGAGAAGCGGCAGGCAACTACATTGTTCCTCTCTACCCTTACAAAGAAATAGAAAAAGCCACAAATTTTTTCTCGGAGAAACACAGGCTAGGAACCGGTGCTTACGGCACGGTTTATGCAGGAAACCTTCACAATGATGAATTGGTTGCTATAAAAAAGATCAGGTATAGAGACACCAACAGTGTTGACCAAGTAATGAATGAGATCAAGCTCCTTTCTTCGGTTAGTCATCCGAATTTAGTTCGACTCTTAGGCTGCTGCATAGAAAAAGGAGAGCATATACTTGTTTATGAGTATATGGCAAATGGAACATTATCTCAACATTTACAACGAGAAAGAGGCGGAACACTTCCTTGGACAATAAGACTCACCATTGCCTCCGAAACTGCTAATGCTATAGCATTTCTCCACTCTTCAGATCCTCCAATTTATCATAGAGATATAAAATCTAGTAACATACTTTTGGACTTTAGCTTTCAATCAAAAGTAGCGGATTTCGGACTTTCTAGGTTAGGCATGACAGAAACATCACATATCTCAACCGCGCCACAAGGGACACCGGGTTATGTTGATCCACAATACCACCAAAACTTTCACCTTTCTGATAAAAGTGATGTATATAGTTTCGGAGTTGTTTTGGTAGAGATAATAACAGCAATGAAAGTGGTTGATTTCGGTAGACCTCAGAGTGAGATTAATTTAGCAGCACTCGCAGTGGAAAAAATTAGGAAAGGTCGTATCGACGATATCATAGATCCTTTCCTTGATCTAAATAGGGATGCTTGGACACTCTATTCTGTTAACAAGGTAGCCGAGCTTGCATTTAGATGCCTCGCTTTTCATAGCGAAGCAAGGCCTAGTATGATTGAAGTGGCTGGGGAGCTAGATAATATCAGACGTAGTGGATGGGCGACAATGGAGGAAACTATATGTATGGGATCGTCAGTTGGATCCGCCTGTTCATCGCCTCGTAATAATGGAAATGAGAATTTAGTTTCAAAGAATGAGATATCGGTTGTTCCACAAAAGACTAATAGTTTTTTGCATCCAATAGAGGAGGTAAAGGATAGTTCCCCTGTATCTATGCATGGTACTTGGTCAAGTAGACCGAGTTCACCTTCAACAAACAGCTTATTGGGAAATGTTATTCAGTGA 2100 0.4014 MFYHHKSNLYILIIIIIIIITIFTTVITADQNKNNCNQRCGEQIVNYPFGFSDDCEIKLNCSINKELKIDELKVQEVNSDSIFISLPAKCNRSTSFIEPLFGKNFAPTWKNTFLVQKCNSNLSGCVIPPSIFIGTNINVEGCDDKTRSDNITCFTQSQRKRTREHEDVLTVDDWKINGCKFLFSSIAVDSSKIKEVPIQFQVIELGWWLEGTCGCSDDANCTKVHFDGDKQGFRCRCREGFVGDGFVNGIGCRRVSHCRPSTFGSSKCGKTLRIGLLIGVILVGASVTAALAMLCYFAKRRSTWLTKQLTVKRLLREAAGNYIVPLYPYKEIEKATNFFSEKHRLGTGAYGTVYAGNLHNDELVAIKKIRYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEKGEHILVYEYMANGTLSQHLQRERGGTLPWTIRLTIASETANAIAFLHSSDPPIYHRDIKSSNILLDFSFQSKVADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFGRPQSEINLAALAVEKIRKGRIDDIIDPFLDLNRDAWTLYSVNKVAELAFRCLAFHSEARPSMIEVAGELDNIRRSGWATMEETICMGSSVGSACSSPRNNGNENLVSKNEISVVPQKTNSFLHPIEEVKDSSPVSMHGTWSSRPSSPSTNSLLGNVIQ 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03968 699 CDD STKc_IRAK 345 613 - -
Trre15g03968 699 ProSitePatterns Protein kinases ATP-binding region signature. 345 368 IPR017441 GO:0005524
Trre15g03968 699 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 682 IPR044652 GO:0004672
Trre15g03968 699 Gene3D Transferase(Phosphotransferase) domain 1 415 627 - -
Trre15g03968 699 ProSiteProfiles Protein kinase domain profile. 339 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03968 699 Gene3D Phosphorylase Kinase; domain 1 301 414 - -
Trre15g03968 699 FunFam Wall-associated receptor kinase-like 20 415 623 - -
Trre15g03968 699 Pfam Protein kinase domain 340 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03968 699 SMART serkin_6 339 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03968 699 FunFam Wall-associated receptor kinase-like 14 306 414 - -
Trre15g03968 699 MobiDBLite consensus disorder prediction 671 699 - -
Trre15g03968 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Trre15g03968 699 SUPERFAMILY Protein kinase-like (PK-like) 321 608 IPR011009 -
Trre15g03968 699 MobiDBLite consensus disorder prediction 675 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03968 Trre-Chr15 49824473 49829654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03968 5 697 Receptor kinase-like Gene Family AT2G23450 54.196 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre15g03968 Pkinase 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03968 - - gmx:100810861 986.867