Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03949 ATGATCCAAGAACTCTTTGGTAATGGTGCTTCCTTCATAGCAAATGAAAGAAACTACTCTTCCATTAATGGAGGAGTTAGAGGAGTTTTACTTCAACAAACTACTCAATCTCTTTCATCTTCTCCATGTCCATCTTCCACAACCACAACCACTGCCACCACCACACCAACCACCACCACAACATCAGAAAACCAACAACATCTGAGGTGTCCAAGATGTGATTCATCAAACACAAAATTCTGTTACTACAATAACTACAACCTCACTCAGCCACGCCATTTCTGCAAGACATGTCGTCGTTACTGGACAAAAGGCGGTGCTTTACGCAACGTCCCCATCGGAGGTGGCTGCCGGAAAAACAAAAGCATCGGCATGTCGAACACCGGGGCAAAAACAACAACAACAAACAAAATGAAAACAGTTGCTTCAGAGTTTATCAGGTCAGCAGGTAGTCAGGGGTTCGATCATGTCGTGGCACCACCAAGTCAAATCCTTTGGGGTTCTCCACCAAATTCTCATCTACTTTCTTTGCTAAGATCTAGTCAAAACCAAAGCCCTAACCCTAATCCTGTTAAGGAAGAAGGAAATAATAACTTAGGGTCCCATATTTCTCACATGATGAGTTCTCAACCGTTGATTTATGATGGTGGTGTTGGACATGTTTTATGCAACCCATTTTGGAGAAACAATCATGATAATCAAACTCAACAACTACAAAATAATGGTGGATTTGTACTTGGGGAACAACAACATCATCAAAACAGTGGAATCCAAGAACTTTACCAGAAGCTAAGGTCATCAACAACATCATCATCAGGTAATAATTATTGCAGTGAAATTTCAGCTTCACCAACAGTGTTACTAGGGAACGTGGCTTCTAATCCATCTTCTATATCAAATATTTTGGAGACAACTTCAGTTACTGGTGGTGAATTAGGGTACTGGAATCCAATTCCAACTCTTACTTGGTCTGATCTTCCAACCACCAATGGTGCATATCCACCATAA 1008 0.4117 MIQELFGNGASFIANERNYSSINGGVRGVLLQQTTQSLSSSPCPSSTTTTTATTTPTTTTTSENQQHLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSIGMSNTGAKTTTTNKMKTVASEFIRSAGSQGFDHVVAPPSQILWGSPPNSHLLSLLRSSQNQSPNPNPVKEEGNNNLGSHISHMMSSQPLIYDGGVGHVLCNPFWRNNHDNQTQQLQNNGGFVLGEQQHHQNSGIQELYQKLRSSTTSSSGNNYCSEISASPTVLLGNVASNPSSISNILETTSVTGGELGYWNPIPTLTWSDLPTTNGAYPP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03949 335 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Trre15g03949 335 MobiDBLite consensus disorder prediction 180 202 - -
Trre15g03949 335 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Trre15g03949 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 56 262 IPR045174 GO:0003700|GO:0006355
Trre15g03949 335 MobiDBLite consensus disorder prediction 37 65 - -
Trre15g03949 335 Pfam Dof domain, zinc finger 66 122 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03949 Trre-Chr15 49558562 49559569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03949 50 154 C2C2-Dof Transcription Factor Family AT5G65590 53.333 8.63e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre15g03949 zf-Dof 9.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03949 - - psat:127074489 477.248