Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03939 ATGACGATGATTCTAGACCCTTTTATTGGGAAATTAGTTGATGAACTAATGAGTTCAGTAGTTGAAATGAAAGACAGAGCTTTGAAATTCAAACCAACTCTAGAACAGTTAGAAACAACTCTTAAATCATTAGCACCATTGATCAAACAAATAGATGAATATAACAAGAAACTCGATCGATCGGCTAAAGAAACAGATGGACTAATCAAGCAAATGAAAAAAGGAAAAGAACTCGTTCTAAAATGTTCTGATAAAGAACAATTTCAGTGGTGGAACTGTTTTTACAAAAAAGCTGAATATCAAGAGAAACTTGAAAAATTGGATGGTGAAATTAAGAGATTCTTTGATCTTGATATGAGAGCTCAAGATATGAGAAATGGGTTGGAAGTACTTGTGGAGATTAAGGAGTTGAGAGCTGAATTTAGAAGTGTTGGTTTGAGGAATCAGAGGATTGAATTAAGAGGTGTTTGTGTGCCACCTCAACCACCTGCTTTTACTGTTGGATTGGATTGTCCTTTGAATGAGTTGAAGAAGAGATTGTTGAAGGATGAGGTTAGTGTTTCTGTTGTTACTGTTACCGGTTCCGGTGGTTCGGGGAAATCTACTTTGGCTAAAAGGTTTTGTTGGGATGAACAAGTTAAAGGTAAATTCAAGGAAAATATCTTCTTCATTACCTTTACAAAAACACCAAAGCTGAATGCTATAGTGCAGAAAATCTATCAACACACTAATTACCAAGTTCCGGGGTTTCAAAGCGATGAAGACATGTTTAACCAATTGGAATATTTGATGAAACAAATTGTGCAAAAGGGCCCAATATTATTGGTCTTAGACGATGTTTGGGAGGAATCAGTATCACTTGTTGACAATTTTGTGTTTCAGATTCCATACTACAAGATTTTGTTGACATCAAGGTTTAAAATTAAAAGATTTGGTCATCCATTTGTATTGAAACATCTTTCTGAAGCACATTCTATAAACCTATTTAAGCATTCAGCATCCTTAACTAAGAGCAACTCAGATGTTACTGATGAAATTGTCAAAAAGATAGTAAGAAGTTGTAGCGGTTCTCCCTTAGCACTTCGAGTGTGTGGCAGATCATTAAGTAACGAAGACCAGATAGTTTGGCTTAACCGAGCAAAAGAATTATCAGCTGGTAGTTCGATTCTAGATTCTAGCAAAGACGTGCTTTCTTGTCTCCAAAAGAGCTTAGATGTGTTGGATCCTAAGTCCATGGAATGTTTTAGGGACTTGGGCTTATTTCCTGAAGACCAGAGGATCCCTGCTGCTGCCCTTATTGATATGTGGGCAGAATTAAGGAATGATGATGAAGCAACTGCAATGGAGCAAATTTATAAGCTAGTTAACCTTAACTTGGCTGATATTATTGTGACAAGGAAAGTTGCAAGTGGCGCGATTGATTACAACTATCACTATGTTACACAATATGGTCTTCTTAGGGATCTAGCCATCCGCGATAATGATCAAGAGGCGGAAGAGAAGAGGAATAGACTCATAATTGATACAAGTGCAAATAATCATCCCTCATGGTGGACTTCAGAGAATGAATATCATATTGCCGCTCGCATATTATCGATATCAACTGATGAAACATTCACTACAAAATGGTGCAACTTGCAGCCAACTGAAGTTGAGGCATTAGTGTTAAACCTTAGAGAAAAGAAGTGCACACTACCAATGATAGAGGTTGTTCAAGAAGATTTCAATTTAAATTTTCTTTACAATTAA 1749 0.3648 MTMILDPFIGKLVDELMSSVVEMKDRALKFKPTLEQLETTLKSLAPLIKQIDEYNKKLDRSAKETDGLIKQMKKGKELVLKCSDKEQFQWWNCFYKKAEYQEKLEKLDGEIKRFFDLDMRAQDMRNGLEVLVEIKELRAEFRSVGLRNQRIELRGVCVPPQPPAFTVGLDCPLNELKKRLLKDEVSVSVVTVTGSGGSGKSTLAKRFCWDEQVKGKFKENIFFITFTKTPKLNAIVQKIYQHTNYQVPGFQSDEDMFNQLEYLMKQIVQKGPILLVLDDVWEESVSLVDNFVFQIPYYKILLTSRFKIKRFGHPFVLKHLSEAHSINLFKHSASLTKSNSDVTDEIVKKIVRSCSGSPLALRVCGRSLSNEDQIVWLNRAKELSAGSSILDSSKDVLSCLQKSLDVLDPKSMECFRDLGLFPEDQRIPAAALIDMWAELRNDDEATAMEQIYKLVNLNLADIIVTRKVASGAIDYNYHYVTQYGLLRDLAIRDNDQEAEEKRNRLIIDTSANNHPSWWTSENEYHIAARILSISTDETFTTKWCNLQPTEVEALVLNLREKKCTLPMIEVVQEDFNLNFLYN 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03939 582 Coils Coil 97 117 - -
Trre15g03939 582 Pfam NB-ARC domain 173 402 IPR002182 GO:0043531
Trre15g03939 582 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 7 140 IPR008808 -
Trre15g03939 582 Gene3D - 319 403 IPR042197 -
Trre15g03939 582 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 4 567 IPR039203 GO:0050832
Trre15g03939 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 418 IPR027417 -
Trre15g03939 582 ProSiteProfiles RPW8 domain profile. 1 153 IPR008808 -
Trre15g03939 582 PRINTS Disease resistance protein signature 189 204 - -
Trre15g03939 582 PRINTS Disease resistance protein signature 267 281 - -
Trre15g03939 582 PRINTS Disease resistance protein signature 354 368 - -
Trre15g03939 582 Gene3D - 149 312 IPR027417 -
Trre15g03939 582 Gene3D - 404 487 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03939 Trre-Chr15 49482058 49485595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03939 167 427 WRKY Transcription Factor Family AT5G45050 23.897 2.42e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03939 - - mtr:25502906 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03939 15 49482058 49485595 Trre15g03939 15 49482058 49485595 ECH