Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03938 ATGTTGCTGGAAATAGACCCTACACAACGTGAAAACACAGTTGATTCGTTAGTTTATGAGGCCCAAGCTCTTCTGAGGGACCCTATTAATGGGTATTTGAATTATGTTCACAATCTTGAACATCAGTCAATGGAAGTTCAACAAGAAATCAACAATATGAAGAGTGAACTGACAAAATACCTCGGTCTTGAGGTCATTCAAATTGTGATGAACAATCCTGATTATTAG 228 0.3728 MLLEIDPTQRENTVDSLVYEAQALLRDPINGYLNYVHNLEHQSMEVQQEINNMKSELTKYLGLEVIQIVMNNPDY 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03938 75 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 61 - -
Trre15g03938 75 Coils Coil 36 56 - -
Trre15g03938 75 ProSiteProfiles LOB domain profile. 1 57 IPR004883 -
Trre15g03938 75 Pfam Lateral organ boundaries (LOB) domain 1 54 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03938 Trre-Chr15 49445814 49446041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03938 1 63 AS2 family AT3G27650 38.095 4.35e-12 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre15g03938 LOB 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03938 - - cam:101511490 65.855