Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03934 ATGGGAGAAACATTAGAATTAGATGTTATTACATCACAGCTTCAACAAAAATTCAAACAAGTTCAAAGGTCAAGTCTCCAAGATTTGTCTCCAATTTTTCAAGAAATTAACCAATTTAATGAACAATTGGATCCACCAAGAGAAGAAATCAAGACTCTCATAAAAGAAAATCATGCAGAACAAGAACAAAAGGTTGACCAAAAGAATCTTTGTTCTTGGCTTCAGCTGTGTCTTGATGGAATTTTGCATAAGAAGGAGAAAGAAGATTTTGATTCCTCTTTTGCTGATGACAAACAAAAAGTTATTGCAAAAGATTTTGAAGATACACTTTATAAGTTGAGAGAAGCTCTTGAGATTCTCAATAAGGAGAATTTTGAGAAGAAATTAAGTGGATCTGGAGGACCAATTTTTAAGGGTCCTTTTGGTGTTCCTGAAAATTCAGAATTTACTGTTGGTATGGATTTTCAATTGATGAAGTTGAAGACAGAACTTCTCAAAGATGGAAAATCTACCCTATTGGTGACTGGAATGGGTGGATTGGGAAAAACCACTTTGGCTAAACAGCTATGTAGGGATGACCAAGTTAAGAGTAAATTCCGGGGAAATATATTATTTGTCGTCTTCTCAAAAACACCCCAGTTGAAGACTATTGTAGAGAGACTTTTTGAACATTGTGGATATCCTATATCAGAGTTTCAAAGTGATGAAGATGCAGTTAATAAATTGGGACTTTTACTGAAGAAAATCGAGGGAAGTCCAATATTGTTAGTCTTGGACGATGTTTGGCCTGGCTCAGAAGACCTTGTAGAGAAATTTCAATTCCAGATATCAGATTATAAAATTTTAGTGACTTCAAGGTTTGCAATATCTAGATTTGACAAAACCTTTATACTAAAGCCTCTTGTTCACGAAGACGCAGTAACCCTTTTCCGTCACTACATAGAGTTGGGAAAAACTCATTCAAATATTCCTGACAAAGAACTTATCCAAAAGGTTGTAGAAAATTGCAAGGGTCTACCTCTTGCCATCAAAGTTATTGCAACATCACTCAGTAATCGACCATACGAATTGTGGGAAAAGATTGTGAAGGAACTTTCTCAAGGTAGTTCTATACTTGATTCTAATATGGAATTACTTACTCGCCTCCGCAAGATCTTGGATGTTTTGGAAGATAATCCCATTAACAAGGAGTGCTTCATGGACCTAGCTTTATTCCCTGAAGATCAGAGAATTCCTGTTGCTGTTCTGATTGATATGTGGGCAGTGTTGTATGGACTAGATGACGACGGCATAGAAGCAATGAACATCATCAACAAATTAGACTCTATGAATCTGGCTGATGTCTTAGTAGCTAGGAAAAATGCAAGTGACACAGAAAATTACTACTACAATAACCACTTCATCGTCCTTCATGATTTACTAAGAGAGCTTGGAAATTATCAAAACACTCAAGGACCTGTTGAACAAAGAAAAAGACTTCTTATTGACATTAATGAATACAAACGTGATCAGTGGCTTGCGGAGAAGCAGAGAGGCACAATGTCCCGCATATTGTCCAAATTTGTTAAATTGTGTGTTAAGCCAAAGCCTCAGCAGGTTCCAGCCCGTACATTGTCTATATCAATTGATGAAACTTGTGCTTCAGATTGGTCTCAAGTTCAACCAGCTCATGCCGAGGTTCTTATTTTAAATCTTCAAACCAAGCAGTACTCATTTTCAGAGTTGATGGAGGAAATGAGCAAACTAAAAGCTCTCATAGTCATAAATCACGGTTTCCGTCCTTCTGAACTGAACAACTTTGAGCTACTTAGCTCTTTATCCAACCTGAAAAGAATTAGGCTAGAGAGGGTTTCTGTTCCTTCCTTTGGCACATTCAAGAATCTGAAAAAATTATCCCTCTACATGTGTAATACAAGACTAGCTTTTGAAAAGGGTAGCCACCAAATTTCTGATTCATTTCCAAATTTAGAAGATTTGAGCATTGATTATTGCAAGGATTTGATGGCATTGCCTAGTGGGGTGTGTGATATTCCCTCATTAAAGAAGCTCAGTATTACTAATTGCCATAAGCTTTCTTCGCTGTCCAAAGATATTGGAAAGTTGGAGAATTTGGAACTCTTGAGCTTGATTTCCTGCACTGATTTGGTAGAGCTTCCAGATTCTATTGGAAGGCTTTTAAATCTAAGACTACTTGACATTTCCAACTGCTTAAGCCTTTCAAGTTTACCTGAGGACATTGGCAATCTGTGTAATCTAAGAAATCTCTACATGACTAGTTGTGCAAGCTGTGAATTGCCGCTATCAGTTGTCAATTTTGAGAATTTAAAGGTGATATGCGATGAAGAAACAGCTTCTTCATGGGAATCTTTCCAATCTATGATGTCCAATTTAACTATAGAGGTTCCTAAAGTTGAAGTCAATTTAAATTGGCTTCACACAATTCGCTTAAGACCTTGA 2457 0.3679 MGETLELDVITSQLQQKFKQVQRSSLQDLSPIFQEINQFNEQLDPPREEIKTLIKENHAEQEQKVDQKNLCSWLQLCLDGILHKKEKEDFDSSFADDKQKVIAKDFEDTLYKLREALEILNKENFEKKLSGSGGPIFKGPFGVPENSEFTVGMDFQLMKLKTELLKDGKSTLLVTGMGGLGKTTLAKQLCRDDQVKSKFRGNILFVVFSKTPQLKTIVERLFEHCGYPISEFQSDEDAVNKLGLLLKKIEGSPILLVLDDVWPGSEDLVEKFQFQISDYKILVTSRFAISRFDKTFILKPLVHEDAVTLFRHYIELGKTHSNIPDKELIQKVVENCKGLPLAIKVIATSLSNRPYELWEKIVKELSQGSSILDSNMELLTRLRKILDVLEDNPINKECFMDLALFPEDQRIPVAVLIDMWAVLYGLDDDGIEAMNIINKLDSMNLADVLVARKNASDTENYYYNNHFIVLHDLLRELGNYQNTQGPVEQRKRLLIDINEYKRDQWLAEKQRGTMSRILSKFVKLCVKPKPQQVPARTLSISIDETCASDWSQVQPAHAEVLILNLQTKQYSFSELMEEMSKLKALIVINHGFRPSELNNFELLSSLSNLKRIRLERVSVPSFGTFKNLKKLSLYMCNTRLAFEKGSHQISDSFPNLEDLSIDYCKDLMALPSGVCDIPSLKKLSITNCHKLSSLSKDIGKLENLELLSLISCTDLVELPDSIGRLLNLRLLDISNCLSLSSLPEDIGNLCNLRNLYMTSCASCELPLSVVNFENLKVICDEETASSWESFQSMMSNLTIEVPKVEVNLNWLHTIRLRP 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03934 818 Gene3D Ribonuclease Inhibitor 539 798 IPR032675 -
Trre15g03934 818 Coils Coil 103 123 - -
Trre15g03934 818 Pfam NB-ARC domain 158 386 IPR002182 GO:0043531
Trre15g03934 818 PRINTS Disease resistance protein signature 723 739 - -
Trre15g03934 818 PRINTS Disease resistance protein signature 171 186 - -
Trre15g03934 818 PRINTS Disease resistance protein signature 336 350 - -
Trre15g03934 818 PRINTS Disease resistance protein signature 248 262 - -
Trre15g03934 818 SUPERFAMILY RNI-like 571 778 - -
Trre15g03934 818 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 21 811 IPR039203 GO:0050832
Trre15g03934 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 402 IPR027417 -
Trre15g03934 818 Gene3D - 382 479 IPR036388 -
Trre15g03934 818 Gene3D - 140 293 IPR027417 -
Trre15g03934 818 Gene3D - 301 380 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03934 Trre-Chr15 49320382 49324805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03934 174 770 WRKY Transcription Factor Family AT5G45050 23.501 1.66e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03934 - - mtr:11409724 1149.04