Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03930 ATGGAAGTTGTTGATGAGAATAGAGAACTTAATATTGAAGGAAACACAGAGTATGGTGTTGATTCACATGTTAACAATGATTCACATATTAGTGATTCAAATGGTGATGGAAATCAAGAACCATACATTGGAATGGAATTTGACTCAAAAGAAAATGCTCATTCATTCTATGCTCACTATGCAAAATGTGTTGGGTTTGGGATTTCAATTAAAACTAGTCGTCGTTCAAGGATTTCTAGAGAATTTATTGATGTAAAATATGCTTGCACAAGGTATGGAAAAAAGCGAGAATCCTCTGCAATTAACCCACGTCCTTGTTTGAAGGTGGAATGTGAGGCTTACTTACGTATAAAAAGAAAGTCTGATGGGAAATGGATTGTTCACGACTTCATTAAAGAGCACAATCATGAGCTTTTTCCAGCACATGCACATTATTTTCCCTGCCATAGACGAATCAATAAAGCTCAAAAGAGCTATATTGAATCTTTGCAACATGCCGGAGTGAGAACAACCAAAATTTTTGCAACAATGGCCAAACAACATGGAGGATATGAAAATATTGGTTGCTTGGAGAAGGATGTTAGAAATAATTTAGATAAAACTCGCCCGTCTATCTTTAGAATCAGGAGATGCAAATGCAATGTTGGACTGTTTTATGGCTATGCAAGAAGAACTCATCAATAG 684 0.3582 MEVVDENRELNIEGNTEYGVDSHVNNDSHISDSNGDGNQEPYIGMEFDSKENAHSFYAHYAKCVGFGISIKTSRRSRISREFIDVKYACTRYGKKRESSAINPRPCLKVECEAYLRIKRKSDGKWIVHDFIKEHNHELFPAHAHYFPCHRRINKAQKSYIESLQHAGVRTTKIFATMAKQHGGYENIGCLEKDVRNNLDKTRPSIFRIRRCKCNVGLFYGYARRTHQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03930 227 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 16 192 - -
Trre15g03930 227 Pfam FAR1 DNA-binding domain 55 140 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03930 Trre-Chr15 49243340 49244023 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre15g03930 FAR1 6.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03930 - - mtr:120578282 307.375