Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03928 ATGAGAACCGTCACACAACTTATTTCCCTTACAACAACATTTCATCATGTCTTCAACAAGATGCCACAATTTGTTGATAAAGCTCGAAAGAATCAAACCACAAGACGATTATTGAAGTCTACTTTAAAAGATTTATCTCTTCATGTTCGAGACATAAACCAATTCAATGAACATTTGAATACTCTCATAATCAAGGAATGCTTCATGGACCTAGTAGCCTTATTTCCTCAACACCATAAAATCTCTGTTGCTGCTCTCATTGATATGTGGACAGAGTTGTATGATCTAGATGATAACGGAATCGAAGCAATGCAAATCATCAACAAATTAGGATCCATGAATCTCGCTAATGTCTTAATAGCAAGGAAAAGTGCAAGTGACGCGGATAATTATAACTACAATAACCACTTTGTTGTCATTGATGATCTTCTAAGAGATCTTGGAATTTACCAAAGCACTAAGGAACCAATTGAGATGACAAAAAGACTGATTATTGACATGAATCAAAATAACTGTCTTGGGGAGAACGAACGAGGCTTCATGACGCGTATATTGTCAAAACTTTTTAACTTGTGTGTTAGACAAAATCCGCAACAGCTCGCTGCTCGTATATTGTCTGTGTCAACTGATGAAACTTGTGTGTTAGATTGGTCTCAAATGCAACCTGATCAGGCTGAGGTTCTGATTTTAAATCTTCATACAAAGCAGTACTTATTTCCTGAGTCGATGGAGAAAATGGTTATGCTCAAAGTTCTGATAATCACAAACTATGGTTTCCATCCTTGTGAGCTGAATAACTTTGAGTTGCTTGACTCTTTACACAACCTGAAAAGAATCAGACTCGAGCGAATTTCTGTTCCTTCCTTCAGCACATTGAAGAATCTGAGAAAATTATCGCTCTACATGTGTACTACTAAAATGGCTTTTGAAACGGGCAGTGTCCTAATTTCAGAAGCATTTCCAAATCTAGAAGAATTGAACATTGATTACTGCAAAGATTTGGTGGTATTGCCTACTGATATCTGTGATATTACGCCTTTAAAGAAGCTCAGTGTTACTAATTGCCACAAGCTTTCTGCGCTTCCCCGAGATATTGGAAAATTGGAGAATTTGGAACTTCTAAGGCTCAGTTCATGTACTGATTTGGAACTGATACCGAATTCCATTGGAAAGCTTTCGAATCTAACAGTTTTTGACATCTCAAACTGCATAAGCCTTTCAAGTTTACCTGAGGAATTTGGTAATCTGTGCAATCTAAGGAATCTTTACATGGCAGGCTGTGCAAGTTGTGAATTGCCATTCTCAGTCGTCAATCTTACGAATTTGAAGGTGATAACGTGCGATGAAGAGACAGCTGCTTCATGGGAAGCTTTCCAACCTATGCTTCCCAATATGAAGATAGAGGTTCCTCATGTTGATGTTAACTTAAATTGGCTTCATTAA 1443 0.3749 MRTVTQLISLTTTFHHVFNKMPQFVDKARKNQTTRRLLKSTLKDLSLHVRDINQFNEHLNTLIIKECFMDLVALFPQHHKISVAALIDMWTELYDLDDNGIEAMQIINKLGSMNLANVLIARKSASDADNYNYNNHFVVIDDLLRDLGIYQSTKEPIEMTKRLIIDMNQNNCLGENERGFMTRILSKLFNLCVRQNPQQLAARILSVSTDETCVLDWSQMQPDQAEVLILNLHTKQYLFPESMEKMVMLKVLIITNYGFHPCELNNFELLDSLHNLKRIRLERISVPSFSTLKNLRKLSLYMCTTKMAFETGSVLISEAFPNLEELNIDYCKDLVVLPTDICDITPLKKLSVTNCHKLSALPRDIGKLENLELLRLSSCTDLELIPNSIGKLSNLTVFDISNCISLSSLPEEFGNLCNLRNLYMAGCASCELPFSVVNLTNLKVITCDEETAASWEAFQPMLPNMKIEVPHVDVNLNWLH 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03928 480 SUPERFAMILY RNI-like 239 447 - -
Trre15g03928 480 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 64 479 IPR039203 GO:0050832
Trre15g03928 480 Gene3D - 52 151 IPR036388 -
Trre15g03928 480 Gene3D Ribonuclease Inhibitor 195 462 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03928 Trre-Chr15 49212143 49213698 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03928 323 449 Receptor kinase-like Gene Family AT3G11080 32.812 6.41e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03928 - - mtr:11406742 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03928 15 49212143 49213698 Trre15g03928 15 49212143 49213698 ECH
Trre9g00908 9 7028671 7032470 Trre15g03928 15 49212143 49213698 PCT