Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03917 ATGGGTCTCTGCACTTCAAAACCAAATTCTGAACCTCACAATAACATAATCATTCAATTACAACAAGAAATCACTGTTGATTCTGATTCAAATCCAGTAGTTGAAATTCAAAACCCTAAAAAATCACCTTTTTTCCCTTTTTATACTCCAAGTCCTGCTAACCATTTTTTCTCCGGCAAGTTTCCTAAAACTCCGGCGACTCAAAGAACTCCGAGGAGATTTTTTAAACCGGCGTCTCCGGCGAAGCACATTAGGTCGTTGCTTGCTCGGCGTCATGGTTCCGTTAAGCCGAATGGCGGTGCTAGTATTTCGGAAGGGAGTGAAGGTGAAGGTGTTGCTCCTCTTGATAAGAATTTTGGATTTTCTAAGCATTTTGGTAGTAAATACCAGCTTGGTGAAGAAGTTGGTAGAGGACATTTTGGTTATACTTGTTCTGCTGTTGTTAAGGTTAATCATAAGGGTGAGATTAAGGGTCATAGTGTTGCTGTTAAAGTTATTCAGAAAGTTAAGATGACTACTGCTATTGCTATTGAGGATGTTAGAAGGGAAGTGAAAATTTTGAGAGCTTTGAATGGACACAAAAATTTGATTAAATTCTATGAGGCTTATGAAGACCATGATAATGTCTATATAGTCATGGAGTTGTGCGAAGGAGGCGAGCTTTTGGACAGAATTCTATCGAGAGGTGGGAAATACTCAGAGGAAGATGCAAAAGCTGTCATGACACAAATACTGAATGTTGTTGCATTTTGCCATCTACAAGGTGTTGTTCATCGTGATCTTAAACCCGAGAACTTCTTGTTTTCAACCAAAGACGAGAACTCAGAGCTGAAGGCGATAGACTTTGGTTTGTCTGATTTTGTCAAACCAGATGAACGGCTTAATGATATCGTTGGTAGTGCATACTATGTGGCTCCCGAGGTACTGCACAGAGCATACAATACAGAGGCTGACACATGGAGTATTGGCGTGATTGCATATATTTTATTATGCGGCAGTCGTCCATTTTGGGCACGGACTGAATCCGGGATCTTTCGTTCCGTATTGAAAGCTGATCCAACTTTTGATGAACCTCCTTGGCCTTCTTTGTCAGATGAGGCACAAGATTTTGTTAAGCGATTACTAAATAAAGATCCAAGGAAGAGAATGACTGCAGCACAGGCATTAGGTCATCCATGGATTAAAAGTTATAATATTGTAAAAGTACCCCTGGATATTCTAGTGTTCAAGCTCATGAAGTCATACATGCGTTCCTCCTCTCTACGAAAAGCAGCTTTAAGGGCTCTGTCTAAGACGTTAGCTACTGATGAGCTGAATTATTTGAAGGAGCAGTTTTCACTTTTAGAACCAAACAAAAATGGCACCATTAGCTTGGAAAATATCAAAGCGGCCTTGATGAAGAATGCAACAGATGCTATGAAGGAGTCTCGCATTCCTGATCTTCTGGCATCACTCAATGCCTTGCAATATAGAAGGATGGATTTTGACGAGTTCTGTGCAGCTGCACTCAGTGTTCATCAACTTGAAGCACTTGACCGGTGGGACCAACATGCACGCTGTGCCTATGAAATTTTTGAAAAGGATGGAAACAGAGCTATCATGATTGAGGAACTAGCTTCGGAGCTTGGCCTTGGTCCATCAGTACCTGTTCATGCTGTTCTTCATGACTGGATAAGGCACACCGATGGAAAGTTAAGCTTCCTAGGGTTTGTTAAGTTGCTACACGGTCCATCTCGAAGTCTTGTAAAACCTCCTCAGTAA 1761 0.4128 MGLCTSKPNSEPHNNIIIQLQQEITVDSDSNPVVEIQNPKKSPFFPFYTPSPANHFFSGKFPKTPATQRTPRRFFKPASPAKHIRSLLARRHGSVKPNGGASISEGSEGEGVAPLDKNFGFSKHFGSKYQLGEEVGRGHFGYTCSAVVKVNHKGEIKGHSVAVKVIQKVKMTTAIAIEDVRREVKILRALNGHKNLIKFYEAYEDHDNVYIVMELCEGGELLDRILSRGGKYSEEDAKAVMTQILNVVAFCHLQGVVHRDLKPENFLFSTKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYNTEADTWSIGVIAYILLCGSRPFWARTESGIFRSVLKADPTFDEPPWPSLSDEAQDFVKRLLNKDPRKRMTAAQALGHPWIKSYNIVKVPLDILVFKLMKSYMRSSSLRKAALRALSKTLATDELNYLKEQFSLLEPNKNGTISLENIKAALMKNATDAMKESRIPDLLASLNALQYRRMDFDEFCAAALSVHQLEALDRWDQHARCAYEIFEKDGNRAIMIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLVKPPQ 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03917 586 Pfam Protein kinase domain 129 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03917 586 FunFam CDPK-related kinase 3 121 296 - -
Trre15g03917 586 Gene3D Transferase(Phosphotransferase) domain 1 222 416 - -
Trre15g03917 586 SUPERFAMILY EF-hand 422 576 IPR011992 -
Trre15g03917 586 FunFam Calcium-dependent protein kinase SK5 304 399 - -
Trre15g03917 586 FunFam CDPK-related kinase 1 431 503 - -
Trre15g03917 586 SUPERFAMILY Protein kinase-like (PK-like) 126 424 IPR011009 -
Trre15g03917 586 Gene3D Phosphorylase Kinase; domain 1 122 221 - -
Trre15g03917 586 Gene3D - 417 576 - -
Trre15g03917 586 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Trre15g03917 586 SMART serkin_6 129 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03917 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Trre15g03917 586 CDD STKc_CAMK 128 393 - -
Trre15g03917 586 ProSitePatterns Protein kinases ATP-binding region signature. 135 164 IPR017441 GO:0005524
Trre15g03917 586 FunFam CDPK-related kinase 1 122 220 - -
Trre15g03917 586 ProSiteProfiles Protein kinase domain profile. 129 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03917 586 PANTHER SERINE/THREONINE-PROTEIN KINASE 114 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03917 Trre-Chr15 49107771 49111424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03917 1 583 EF-hand Containing Proteins AT3G50530 72.082 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre15g03917 Pkinase 1.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03917 K00924 - gmx:100803313 929.472