Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03916 ATGGTAATTGAGTATGACTTGAAAATCAAGGAGAAGGAGAATGTTTCTTCATCCTTAAATCAAACTCAAACTATACCTGATGCTGTTATTGTTGGCAAAAAAGAAACTTGGAGGAATAATTTTGCAAAACATTTGAAGAAATTTGAGCACTTCTCACCATCTAAAAGGGATAAACATATCTTGTCGCACTACTCACCATCTACCACAATGTCACTGACTGCAAGAGATATCACCCACCGGTGTGCAGCGTGCAAGCATCAACATCGAAGATGCGATTCATCCTGTGAATTAGCTCCATTCTTTCCACCAGACAACCAACAACGTTTCGAAGCTGTACACGAAGTATTCGGAAGGAGCAACGTGTCCAAGATGTTGCGGGAAATAGACCCATCGCTACGTGACAACACAGTTGATTCGTTAGTGTTTGTGGCTGAGACTCGTCTGAGGGACCCAATTAATGGGTATTTGAGTGATGCTCACAATCTTGACCATCGGTTGATGGAAATTCAACAAGAAGTCACCAACGTGAAGAGTGAACTCACAAAATACCTCAGTCCCGAGGTCACTCAAATTGTGATGAATAATCCTAATTGTTTCGGCTTTGAGCCTAGCGACAATAAAAATTCAACTGCTCAGTTGACTGCCGCTCAACACGAACAGTTAAAACTACTGCGACAAAAAATTAATAGGTCTGGCACGGTGTTCAGCTCTGTTGATGGTGATGGGTTTGGGCGGCATGATATGATTAATGGTGCTAAATGA 762 0.4186 MVIEYDLKIKEKENVSSSLNQTQTIPDAVIVGKKETWRNNFAKHLKKFEHFSPSKRDKHILSHYSPSTTMSLTARDITHRCAACKHQHRRCDSSCELAPFFPPDNQQRFEAVHEVFGRSNVSKMLREIDPSLRDNTVDSLVFVAETRLRDPINGYLSDAHNLDHRLMEIQQEVTNVKSELTKYLSPEVTQIVMNNPNCFGFEPSDNKNSTAQLTAAQHEQLKLLRQKINRSGTVFSSVDGDGFGRHDMINGAK 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03916 253 ProSiteProfiles LOB domain profile. 79 180 IPR004883 -
Trre15g03916 253 Coils Coil 159 179 - -
Trre15g03916 253 Pfam Lateral organ boundaries (LOB) domain 80 177 IPR004883 -
Trre15g03916 253 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 79 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03916 Trre-Chr15 49069916 49073567 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03916 81 224 AS2 family AT5G66870 38.095 8.09e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre15g03916 LOB 4.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03916 - - mtr:11411349 161.77