Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03899 ATGCAGGGAAGTGGAGAATTAACAGTTCCCTCAGGATTCAGGTTCCACCCCACTGATGAGGAGCTTCTTTACTATTATTTAAGGAGGAATGTTTCTTATGACGCCATTGATCTTGATGTTATTAGAGAAGTTGATCTAAATAGACTTGAGCCTTGGGATCTCAAAGGCAGGAATTGGTATAGCAGAGCTAATTGCTCTTTAGATATCAAAACAGACTAA 219 0.3927 MQGSGELTVPSGFRFHPTDEELLYYYLRRNVSYDAIDLDVIREVDLNRLEPWDLKGRNWYSRANCSLDIKTD 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03899 72 ProSiteProfiles NAC domain profile. 9 72 IPR003441 GO:0003677|GO:0006355
Trre15g03899 72 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 61 - -
Trre15g03899 72 Pfam No apical meristem (NAM) protein 10 58 IPR003441 GO:0003677|GO:0006355
Trre15g03899 72 Gene3D NAC domain 18 67 IPR036093 GO:0003677|GO:0006355
Trre15g03899 72 SUPERFAMILY NAC domain 5 60 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03899 Trre-Chr15 48789199 48790126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03899 1 57 NAC Transcription Factor Family AT1G79580 71.930 7.74e-26 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre15g03899 NAM 4.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03899 - - vun:114178728 105.145