Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03865 ATGTCTTCTCAAGAACTTAATCATGGGAGCAATAGTGTCCACTTTTTCAAGATTATTCTTCAAACAACCCTTCAACAAGGAAAATTGAGAGTGCCCATAAGTTTTGTGAGGAGGCATTGGAAAGGAATATCAAACCCGGTTACTCTAAGGCTTCCAAATTCGACCGAAAAGAAAGTTTCTTGGGAGAAAACTAGTGATTATGATGTTTGGTTTTGCGATGGATGGAAAGAATTTACAAATTATTTATCTTTGCGTCATTCACAATTAGTAGTCTTTCAATATGAAGAAAACTCTAGTTTTAAAGTGATTGTATTAAGTGCTAGCGGCTTAGAAATAAAATATCCTTTAAGAAGAAAAACTAGTGAAGAATACGAAGAGATTGAAGAGAGTGATTGTTCTTTGAAAATTATTGAGGATCCTTCATCATCGCGGGGTAAAAGGACAAAATCTCCATTGCCGTCTTCCAAAGTTGGTAAGAAAATGAAAATCAATCCAAAAGAATCTAAGCATGAGCATGAGAAGAGAATCGTCCAAACTCATGCAGGAAGTAGCTTTGACAATCTTAACAAGAGAAGCAATGATTTCTATGAAAAAGTTATGACAAATTTTAATTCGGATAAGAACTTCTTCGCATGTATTCTCCAAAAGTCATACATTGAGAGAGATGTCTTGGTGATACCAATTGAATTTGGTAAGACACATCTACAAAGGATGGTAGGAAGAAATGTTACCCTTTTTGTTGACAAAGATAGAACATGGAATGTTGATTTGAAGCTCGTTTCAAAGAAACAATTTGCACTAAGTGGTGGTTGGAGTAAATTTCGTGCTCACTATAATTTGAAATTTGGTGATGTTTGTGTTTTTATACTAAATAAATGCGAAGGAACGGTTTCATTCCAAGTTGTTATTTTCTCTCTTGAAAAGGAGATGCGCACTCCCTATTTTGAAGGGTAA 954 0.347 MSSQELNHGSNSVHFFKIILQTTLQQGKLRVPISFVRRHWKGISNPVTLRLPNSTEKKVSWEKTSDYDVWFCDGWKEFTNYLSLRHSQLVVFQYEENSSFKVIVLSASGLEIKYPLRRKTSEEYEEIEESDCSLKIIEDPSSSRGKRTKSPLPSSKVGKKMKINPKESKHEHEKRIVQTHAGSSFDNLNKRSNDFYEKVMTNFNSDKNFFACILQKSYIERDVLVIPIEFGKTHLQRMVGRNVTLFVDKDRTWNVDLKLVSKKQFALSGGWSKFRAHYNLKFGDVCVFILNKCEGTVSFQVVIFSLEKEMRTPYFEG 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03865 317 Gene3D - 8 109 IPR015300 -
Trre15g03865 317 CDD B3_DNA 14 106 IPR003340 GO:0003677
Trre15g03865 317 SUPERFAMILY DNA-binding pseudobarrel domain 203 305 IPR015300 -
Trre15g03865 317 CDD B3_DNA 209 305 IPR003340 GO:0003677
Trre15g03865 317 ProSiteProfiles B3 DNA-binding domain profile. 209 307 IPR003340 GO:0003677
Trre15g03865 317 SUPERFAMILY DNA-binding pseudobarrel domain 10 108 IPR015300 -
Trre15g03865 317 Gene3D - 189 308 IPR015300 -
Trre15g03865 317 SMART B3_2 209 307 IPR003340 GO:0003677
Trre15g03865 317 SMART B3_2 15 108 IPR003340 GO:0003677
Trre15g03865 317 MobiDBLite consensus disorder prediction 160 176 - -
Trre15g03865 317 MobiDBLite consensus disorder prediction 138 176 - -
Trre15g03865 317 ProSiteProfiles B3 DNA-binding domain profile. 14 108 IPR003340 GO:0003677
Trre15g03865 317 PANTHER B3 DOMAIN-CONTAINING 205 305 - -
Trre15g03865 317 Pfam B3 DNA binding domain 209 300 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03865 Trre-Chr15 48435567 48437670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03865 15 290 B3 DNA Binding Superfamily AT3G18990 25.688 2.84e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g03865 B3 3.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03865 - - tpra:123894507 426.402