Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03864 ATGTCTTTGTACTGTGGTCCTCCAAAATTCTTCAAAGTTATCCAAAATCATGAACTCCAAAATGGAGAGCTTAAGGTACCGAAGAAATTTGTCGAAAAGTATTGGAAAGGAGTACCAAATCCAGCAGTGATTACACTCCCTAATGGTGTTCAACAACAATTATTTTGGGTGAAGCGCGGCGGAGATGTATTGTTTCAGAAAAATTGGGAGAAAATAGCTAAGTATTTGAAATTTGGATTTATTGTTGTTTTCAAATACGTTGGTGGATCTTGTTTACAGCTTGAGATTTTTGGGCTCAACTGTTTGGAAATTGATTATTCCAAAATGATAGATCAAGTTAAACAAGAACCTGAATTTGTTGAAATCAATGATGATGAAATTCATATTGCTAGTACATCTCAAAGAAGAAAAACGGGTATTAAGAGAGGTGTGACTGTGACTGATCGAAGTTTTAAGATTAAACTGACCCCATCTTATACGGGCTATATATTTAGGATTCCAAGTAAGTTTTCAAGAAGGTACTTGAAAGATTTTGAAGGGACTGCAAGGGTAAGAAAGATTGGTGATGAGGATAAGACTTGGGAGATGGAGGTGAAAAATGATATTCAATGTGGTAGAGATTATTCTGTTGTGAATAGTGGTTGGAAACCATTTGTCAATGAATATAACTTACAAATTGGTGATGTTTGTAAGTTTAAGATGACTCGATTCAAACCACTTTCATTTATCGTTACTATTATCCGAGCCCGATAG 753 0.3506 MSLYCGPPKFFKVIQNHELQNGELKVPKKFVEKYWKGVPNPAVITLPNGVQQQLFWVKRGGDVLFQKNWEKIAKYLKFGFIVVFKYVGGSCLQLEIFGLNCLEIDYSKMIDQVKQEPEFVEINDDEIHIASTSQRRKTGIKRGVTVTDRSFKIKLTPSYTGYIFRIPSKFSRRYLKDFEGTARVRKIGDEDKTWEMEVKNDIQCGRDYSVVNSGWKPFVNEYNLQIGDVCKFKMTRFKPLSFIVTIIRAR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03864 250 Gene3D - 130 250 IPR015300 -
Trre15g03864 250 SUPERFAMILY DNA-binding pseudobarrel domain 6 100 IPR015300 -
Trre15g03864 250 SUPERFAMILY DNA-binding pseudobarrel domain 149 248 IPR015300 -
Trre15g03864 250 ProSiteProfiles B3 DNA-binding domain profile. 149 250 IPR003340 GO:0003677
Trre15g03864 250 Gene3D - 6 101 IPR015300 -
Trre15g03864 250 CDD B3_DNA 8 97 IPR003340 GO:0003677
Trre15g03864 250 CDD B3_DNA 149 248 IPR003340 GO:0003677
Trre15g03864 250 PANTHER B3 DOMAIN-CONTAINING 7 120 - -
Trre15g03864 250 SMART B3_2 10 100 IPR003340 GO:0003677
Trre15g03864 250 SMART B3_2 151 250 IPR003340 GO:0003677
Trre15g03864 250 Pfam B3 DNA binding domain 152 249 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03864 Trre-Chr15 48427440 48428900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03864 8 236 REM Transcription Factor Family AT4G31640 26.749 8.42e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g03864 B3 4.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03864 - - tpra:123898681 300.056