Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03862 ATGGTGGGGGTTGATGAAAAGAAGAAGAATCTGATGTTTCAACAATATGATGATGGAGGAGTAACTGTGGCATTTCATGGGAGAGAGGTGTACGAGGGTGTTCCTCTTTCCCATTTTTCCAAAAAATCTCCTTTAAATGTTGATAAACAAAACAAGGCGGCTGAGAATAAATACAAGCTCTTGAATAGCCCTACAACACAAGCAGCACTTGACGAGACACAATCACCCAAGTTTGCAAGCTCAAATAAAGTGACAACAGATGGAATAATTTCTCGCGGTGAGGCCATATCATCTGCTGTGATTCAAGCCGAAGGACTACGGTCACATTTGAAACCAGAATTCCCTAGTTTTGTGAAGTCCTTGGTCAGATCACATGTAGCTAGTTGTTTTTGGATGGGATTGCCTGTGGCGTTTTGTAAAAGACACTTACCTGATAAGGATACAACTATCACATTGGAAGATGAATCTGGAAGAGAATACAAAACAAAATATATTGCATGTAAGACAGGCTTAAGCGCTGGTTGGAGACAATTTTCTGCTGTGCATAAATTGCTAGAGGGTGATGTGGTTGTCTTCCAGTTAGTTGAACCCACCAAATTTAAGGTTTACATAATAAGAGCTATTAATTCAAGAGAGGTAGATGGAGCCTTTATGAATTTAGACAGCTGCACAAAACAAAAAGGTGGATGCAAGATTTGCAAAAATATCACAGACACTGATGTTGTAGCATGTAATAGTCCAAAAAGAAAAAATGGTAAACATGTTCCACAAGACATCCAAAATAAAAAGAAAACAATTGCACCAAAAATGGAGACTAAGACTAAACAATTTACAGAACAATTTGAAAATGATAGTGACGAAGCATTCTCAGAAATATTTGAGGGATTTAAAATGCCTGAATTCAAAGATTTAAAAGGCTTTAAAAATTTCAGCATTGTAGTAGATGGAATTCCAATCGACGATGAACTCTCTACCGAAGTTCGAAACAAGTACTACAAATTATGTTACAATCAACAAGCTTTTCTTCATGAGAATCTCATTAGAGGATTGAACTACATGCTAATTGTTGGAATTATATCTGAAATTGTTAACATTGCTGATGCAATAAAAGTTAGTGTGATATCTACGCCGCGTGTTGAGTTTTCTAACTGGGATAAAACTTTGCACGCATTTGAGAAATTGGGTATGAATGTTGAATTTTTACGAGTTCGATTGCGCAGGCTTGTAAGCATTGCTTACGAAATGGACAATGCCCCAGAGACAAGAAGATATTTGGCGTATAGAACAGAAGATCACAGTCGAGCAGAAAATGAAATTAAGAATATGGAAATTAAGCTTCATGAATTAAAGGAAGCTTGTAGTGGCTTTGGTGATTATCTTGAGAGTTTGAAACACAAAGCCGAAAGATATGAACATAAGTTTCAGCAAGAAGTTGCTGCTAATTGGTGA 1449 0.3685 MVGVDEKKKNLMFQQYDDGGVTVAFHGREVYEGVPLSHFSKKSPLNVDKQNKAAENKYKLLNSPTTQAALDETQSPKFASSNKVTTDGIISRGEAISSAVIQAEGLRSHLKPEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTITLEDESGREYKTKYIACKTGLSAGWRQFSAVHKLLEGDVVVFQLVEPTKFKVYIIRAINSREVDGAFMNLDSCTKQKGGCKICKNITDTDVVACNSPKRKNGKHVPQDIQNKKKTIAPKMETKTKQFTEQFENDSDEAFSEIFEGFKMPEFKDLKGFKNFSIVVDGIPIDDELSTEVRNKYYKLCYNQQAFLHENLIRGLNYMLIVGIISEIVNIADAIKVSVISTPRVEFSNWDKTLHAFEKLGMNVEFLRVRLRRLVSIAYEMDNAPETRRYLAYRTEDHSRAENEIKNMEIKLHELKEACSGFGDYLESLKHKAERYEHKFQQEVAANW 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03862 482 CDD B3_DNA 115 206 IPR003340 GO:0003677
Trre15g03862 482 Gene3D - 98 210 IPR015300 -
Trre15g03862 482 SMART B3_2 117 208 IPR003340 GO:0003677
Trre15g03862 482 Coils Coil 432 452 - -
Trre15g03862 482 Coils Coil 460 480 - -
Trre15g03862 482 SUPERFAMILY DNA-binding pseudobarrel domain 110 206 IPR015300 -
Trre15g03862 482 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 97 207 IPR044837 -
Trre15g03862 482 Pfam B3 DNA binding domain 117 207 IPR003340 GO:0003677
Trre15g03862 482 ProSiteProfiles B3 DNA-binding domain profile. 117 208 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03862 Trre-Chr15 48382366 48386040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03862 99 223 B3 DNA Binding Superfamily AT3G19184 47.244 4.62e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g03862 B3 4.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03862 - - gmx:100819237 636.336