Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03860 ATGGTGGGGGTTGATGAAAAGAAGAAGAATCTGATGTTTCAACAATATGATGATGGAGGAGTAACTGTGGCATTTCATGGGAGAGAGGTGTACGAGGGTGTTCCTCTTTCCCATTTTTCCAAAAAATCTCCTTTAAATGATAAACAAAACAAGGCGGCTGAGAATAAATACAAGCTCTTGAATAGCCCTACAACACAAGCAGCACTTGACGAGACACAATCACCCAAGTTTGCAAGCTCAAATAAAGTGACAACAGATGGAATAATTTCTCGCGGTGAGGCCATATCATCTGCTGTGATTCAAGCCGAAGGACTACGGTCACATTTGAAACCAGAATTCCCTAGTTTTGTGAAGTCCTTGGTCAGATCACATGTAGCTAGTTGTTTTTGGATGGGATTGCCTGTGGCGTTTTGTAAAAGACACTTACCTGATAAGGATACAACTATCACATTGGAAGATGAATCTGGAAGAGAATACAAAACAAAATATATTGCATGTAAGACAGGCTTAAGCGCTGGTTGGAGACAATTTTCTGCTGTGCATAAATTGCTAGAGGGTGATGTGGTTGTCTTCCAGTTAGTTGAACCCACCAAATTTAAGGTTTACATAATAAGAGCTATTAATTCAAGAGAGGTAGATGGAGCCTTTATGAATTTAGACAGCTGCACAAAACAAAAAGGCAAAAATATCACAGACACTGATGTTGTAGCATGTAATAGTCCAAAAAGAAAAAATGGTAAACATGTTCCACAAGACATCCAAAATAAAAAGAAAACAATTGCACCAAAAATGGAGACTAAGACTAAACAATTTACAGAACAATTTGAAAATGATAGTGACGAAGCATTCTCAGAAATATTTGAGGGATTTAAAATGCCTGAATTCAAAGATTTAAAAGGCTTTAAAAATTTCAGCATTGTAGTAGATGGAATTCCAATCGACGATGAACTCTCTACCGAAGTTCGAAACAAGTACTACAAATTATGTTACAATCAACAAGCTTTTCTTCATGAGAATCTCATTAGAGGATTGAACTACATGCTAATTGTTGGAATTATATCTGAAATTGTTAACATTGCTGATGCAATAAAAGTTAGTGTGATATCTACGCCGCGTGTTGAGTTTTCTAACTGGGATAAAACTTTGCACGCATTTGAGAAATTGGGTATGAATGTTGAATTTTTACGAGTTCGATTGCGCAGGCTTGTAAGCATTGCTTACGAAATGGACAATGCCCCAGAGACAAGAAGATATTTGGCGTATAGAACAGAAGATCACAGTCGAGCAGAAAATGAAATTAAGAATATGGAAATTAAGCTTCATGAATTAAAGGAAGCTTGTAGTGGCTTTGGTGATTATCTTGAGAGTTTGAAACACAAAGCCGAAAGATATGAACATAAGTTTCAGCAAGAAGTTGCTGCTAATTGGTGA 1431 0.3683 MVGVDEKKKNLMFQQYDDGGVTVAFHGREVYEGVPLSHFSKKSPLNDKQNKAAENKYKLLNSPTTQAALDETQSPKFASSNKVTTDGIISRGEAISSAVIQAEGLRSHLKPEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTITLEDESGREYKTKYIACKTGLSAGWRQFSAVHKLLEGDVVVFQLVEPTKFKVYIIRAINSREVDGAFMNLDSCTKQKGKNITDTDVVACNSPKRKNGKHVPQDIQNKKKTIAPKMETKTKQFTEQFENDSDEAFSEIFEGFKMPEFKDLKGFKNFSIVVDGIPIDDELSTEVRNKYYKLCYNQQAFLHENLIRGLNYMLIVGIISEIVNIADAIKVSVISTPRVEFSNWDKTLHAFEKLGMNVEFLRVRLRRLVSIAYEMDNAPETRRYLAYRTEDHSRAENEIKNMEIKLHELKEACSGFGDYLESLKHKAERYEHKFQQEVAANW 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03860 476 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 93 206 IPR044837 -
Trre15g03860 476 SUPERFAMILY DNA-binding pseudobarrel domain 109 205 IPR015300 -
Trre15g03860 476 ProSiteProfiles B3 DNA-binding domain profile. 116 207 IPR003340 GO:0003677
Trre15g03860 476 Coils Coil 454 474 - -
Trre15g03860 476 CDD B3_DNA 114 205 IPR003340 GO:0003677
Trre15g03860 476 Gene3D - 97 209 IPR015300 -
Trre15g03860 476 Pfam B3 DNA binding domain 116 206 IPR003340 GO:0003677
Trre15g03860 476 SMART B3_2 116 207 IPR003340 GO:0003677
Trre15g03860 476 Coils Coil 426 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03860 Trre-Chr15 48382366 48386040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03860 98 234 B3 DNA Binding Superfamily AT3G19184 44.526 1.76e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g03860 B3 4.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03860 - - gmx:100819237 634.409