Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03858 ATGGATGTTCCTATTTGGAATGATAACATTGTTGCAACATCACTATTACCAAATAAAGAAGAAGAAAATTCTATCATAGTATCTACTCTCGTCAACGTTCTTTCCTCGTCCAACTCCAACAACAATGTTAATGTTCCTGTTCCTGTTTCAGATAAAGAAACAGCCACGTCATCATATTCAAGTGGGTCCCTTTCTTTCTTGTCTTACCAGAACGGTCAGTACGATGTTGACACGTGTAATGCATGTAAAATCAACGGCTGTCTCGGATGCAGATTATTTGCTGAAAAGGATAAAGAGGAAGAGAAAAAGAAGAAGAAATACAGAGGAGTGAGACAGAGAGCATGGGGAAAATGGGTGGCTGAGATTAGAGACCCAAAAAGAGCGACACGTGTATGGCTAGGAACATTTCAAACTGCGGAGAATGCAGCAAGAGCTTATGATGAAGCTGCTATTAAGTTTCATGGTGTTAGAGCTAAACTCAATTTTGAATTCTCTGATTATAATATTGATGAGAAGAAGCAAAGTGAAAATGTTATGATGAAACAAAGAAAAACTAAGATAATATCATTTGGGTCTACAAGTGAACAAGACTAG 594 0.3754 MDVPIWNDNIVATSLLPNKEEENSIIVSTLVNVLSSSNSNNNVNVPVPVSDKETATSSYSSGSLSFLSYQNGQYDVDTCNACKINGCLGCRLFAEKDKEEEKKKKKYRGVRQRAWGKWVAEIRDPKRATRVWLGTFQTAENAARAYDEAAIKFHGVRAKLNFEFSDYNIDEKKQSENVMMKQRKTKIISFGSTSEQD 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03858 197 CDD AP2 107 163 IPR001471 GO:0003700|GO:0006355
Trre15g03858 197 SUPERFAMILY DNA-binding domain 106 164 IPR016177 GO:0003677
Trre15g03858 197 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Trre15g03858 197 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Trre15g03858 197 PANTHER DNA-BINDING DOMAIN 58 173 IPR044808 GO:0003700|GO:0009873
Trre15g03858 197 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Trre15g03858 197 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Trre15g03858 197 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Trre15g03858 197 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Trre15g03858 197 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03858 Trre-Chr15 48357352 48357945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03858 18 167 AP2-EREBP Transcription Factor Family AT4G34410 42.473 1.41e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g03858 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03858 - - tpra:123922784 268.855