Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03856 ATGATAATTTGTGAAGTAGGTGAAGGGGATTTGCTTCCAAAGTACTTTAAGCACAACAATTTCTCAAGCTTTGTTCGCCAACTCAACACCTATGGGTTCCGAAAAATTGTTCCTGATAAATGGGAATTTGCCAACGAGAATTTCAAGCGAGGACATAGGCAGCTATTGGCAACAATGAAGCGTCGGAAGGCCCTATCGCCAGTGATCGGAAGACCCATTGGCATTGGATTGAACTCTACGTCTAACTCTGGTGGTGAAGACATGGGTTCAACCTCAACTGGATCGGTGGAACGAAATACCTATTTCGCTGACTTATCGAACGAGAATGAGAAACTGAAAAAGGACAACGAGAAATTGAGCATTGAATTAGCACTTGCAAAGAAGCAGTGCGACGAGTTGGTAGCTTTTCTTCGAAATGTTACTAGTGTATCGCCCGATCAAATTAACCACATCATTCGGCAAGGAACAAGTGGGTCCAGCCTCGATGGGGTGCTTTTTTACAATGACTTGAATGCGACACCAGTAGGTGAAGGTAATAAATGTGAGGGTCTGAAACTATTTGGTGTGAAGATTGACATGACTAATGCTAAGGGTGATTGTCGCAAGAGAGGGCGTGAAGAGTCAATTGGTGGTGCCAACAACAAGTTGAAGACTGTTGTTTAG 663 0.4359 MIICEVGEGDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGHRQLLATMKRRKALSPVIGRPIGIGLNSTSNSGGEDMGSTSTGSVERNTYFADLSNENEKLKKDNEKLSIELALAKKQCDELVAFLRNVTSVSPDQINHIIRQGTSGSSLDGVLFYNDLNATPVGEGNKCEGLKLFGVKIDMTNAKGDCRKRGREESIGGANNKLKTVV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03856 220 FunFam Heat stress transcription factor B-4 5 63 - -
Trre15g03856 220 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 155 IPR027725 -
Trre15g03856 220 Gene3D - 95 142 - -
Trre15g03856 220 Coils Coil 102 129 - -
Trre15g03856 220 ProSitePatterns HSF-type DNA-binding domain signature. 12 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre15g03856 220 SUPERFAMILY "Winged helix" DNA-binding domain 10 62 IPR036390 -
Trre15g03856 220 PRINTS Heat shock factor (HSF) domain signature 24 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre15g03856 220 PRINTS Heat shock factor (HSF) domain signature 11 23 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre15g03856 220 Pfam HSF-type DNA-binding 10 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre15g03856 220 SMART hsfneu3 1 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre15g03856 220 MobiDBLite consensus disorder prediction 76 95 - -
Trre15g03856 220 Gene3D - 5 63 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03856 Trre-Chr15 48335098 48339638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03856 10 207 HSF AT4G36990 49.048 3.67e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre15g03856 HSF_DNA-bind 6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03856 K09419 - gmx:100801638 233.032