Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03842 ATGGAGCAACGAAAGCTTGTGGTTTTGGGTATTCCATGGGATGTTGATACTGATGGCTTGAAAGAATATATGAGCAAATTTGGTGAGCTAGAAGATTGTATTGTTATGAAGGAACGGTCAACTGGCCGGTCTCGCGGTTTTGGATATGTTACATTTGCATCACTGGATGATGCTAAGAATGTGCTATCTAGTGAACACAGCCTTGGCAACAGGACGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCGGTCAAAAAGGTTACCAGAATCTTTGTGGCCAGGATTGCACCATCAGTTACAGAAGAAACTTTTAGGAGTCATTTTGAGAAATATGGTGAAATAACCGATTTATACATGCCAAAGGATCGAGGATCAAAAACACATCGAGGAATTGGTTTTATAACTTTTGCAAGTGCAGATTCTGTAGAGAACTTGATGAAAGAAACCCATGAACTGGGAGGTTCTGATGTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACTTCACAAGGAGGATATGGTGCCTATAATCCATATAGTTCTGCACCAACTAGATATGCAGCACTTGGTGCTCCAACTATGTATGATCATCCTGGTTCAATTTATGGAAGGGGAGAACCTGTTCGTGGAATGAGCAAAAAGATTTTTGTTGGTCGTCTTCCCCCGGAGGCAACCACTGAGGATCTTCGCCTGTACTTTGGAAGATTTGGCCATATATTAGATGCTTATATACCTAGGGATGTCAAGAGATCTGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCTGACGAGGGTGTTGCAGATCGTGTCTCTCGGAGATCTCATGAAATTTGTGGACATCAGGTTGCCATAGATTCAGCGGCACCTCTTGATGAGGCTGGGCCCAGTGGGAATACTATGTTGAATAATAGCATGGATTCTTTCAGGGGATATGGCGGTCCTGTGAGGCCTTATTTTGATCAAAGTCCTGTGAGGCCACCTTATGGGAGAATGTACGATAGCCTGGACTTCGATGATTGGAGTTATGGAGTTGCTAGTAGAAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1119 0.4388 MEQRKLVVLGIPWDVDTDGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASLDDAKNVLSSEHSLGNRTLEVKVATPKEEMRAPVKKVTRIFVARIAPSVTEETFRSHFEKYGEITDLYMPKDRGSKTHRGIGFITFASADSVENLMKETHELGGSDVVVDRATPKEDDFKPIGRTRTSQGGYGAYNPYSSAPTRYAALGAPTMYDHPGSIYGRGEPVRGMSKKIFVGRLPPEATTEDLRLYFGRFGHILDAYIPRDVKRSGHRGFGFVTFADEGVADRVSRRSHEICGHQVAIDSAAPLDEAGPSGNTMLNNSMDSFRGYGGPVRPYFDQSPVRPPYGRMYDSLDFDDWSYGVASRRPSRADWRYRPY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03842 372 MobiDBLite consensus disorder prediction 170 189 - -
Trre15g03842 372 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 224 324 - -
Trre15g03842 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Trre15g03842 372 Gene3D - 1 83 IPR012677 -
Trre15g03842 372 SUPERFAMILY RNA-binding domain, RBD 92 286 IPR035979 GO:0003676
Trre15g03842 372 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Trre15g03842 372 Gene3D - 84 198 IPR012677 -
Trre15g03842 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 302 IPR000504 GO:0003723
Trre15g03842 372 Gene3D - 223 306 IPR012677 -
Trre15g03842 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Trre15g03842 372 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Trre15g03842 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Trre15g03842 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 153 IPR000504 GO:0003723
Trre15g03842 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 283 IPR000504 GO:0003723
Trre15g03842 372 SMART rrm1_1 5 76 IPR000504 GO:0003723
Trre15g03842 372 SMART rrm1_1 93 164 IPR000504 GO:0003723
Trre15g03842 372 SMART rrm1_1 227 298 IPR000504 GO:0003723
Trre15g03842 372 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03842 Trre-Chr15 48052182 48059964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03842 6 276 Eukaryotic Initiation Factors Gene Family AT3G16380 23.381 4.58e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03842 K14411 - gmx:100795240 619.387