Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03840 ATGTCTTTGAGTGTTGCTAATGGTAGTGAATTTTCAAACATTTCTGAAATCAATTCTGATAAGGCAGCATGGGATGTTAAGGTTAAAATCATTAGACTTTGGCAAGTTTCTGATTTTAATCGCACTACTTTACCCTTTTCTATTGAAATGGTTTTACTTGATGCAAATGGCGATAGAATTCATGCAACAGTCAAAAAAACTCTGATTTACAAGTTTAAGGACCAGATTATGGAAGGGAAAATTTATGCTTTACAAAATGTTGGTGTTTCAAATAATGGTGGTGCTTATCGTACTACTCGCCATCCTTATAAGATGAATTTTCAATTTAACACTTTTGTTCAAAGAATTTCTAATTTTGACATTTCAAAATCTCCATTTCACTTTGTTCCAATCTCTGAAATTGTTGGTGGATCTTATGACACTGATTATCTATGTGATGTAATGGGAGTATTGACTGGTGTTGGGCAAGAGCGTGAAGTCACAAATCAGAATGGAAGCACAACAAAGCTCAATGTCATTGCCTTGGAGGCAAATGGGAGTAAGATACAGTGCACATTATTTGGAAATTATGTTGATAAGCTGAATGCATTCCTTGGTGCTGGAGATTGTAACAATGCTGTTGTTATAATGCAGTTTGCAAAGGCTAAAAATTTTCAAGACAAAATCCACATCCAAAACTGCATGAACTGCAGTCTGTTGTTTTTTAACTCCAGCTGTGCAGAAAGTGTTGCATTCAAGTCAAGCTTAGCTGAAAATGTTGATACTCCTTCTCCTCTTGCTTTAACCCAAATTGGATGTGAATCAAGGGTTGAGCCCATTGATGAGTTTTTGCACAACACCCGTAGGATTACCTTGCAGTGTCTTAGAGATGCTGGATCTGAAGGTTATCATGTTGTAGCTGCTCCAATCAAAAAGGTTTTAAACCCTGATAGTTTTTGGTACACAGCTTGTGTGTGCAATAAGGCTGTTATCCCAGACTCAAAAATGTTTTATTGTGAAAAGTGCAACAAGCATGTTGTGAGGGTGTTTCCTAGGTTTTGTATCAAGGTTAGAGTTATGGACAATACTGACTCTGCTATATTTGTCATTTTTGACAAAGATGCATCATCACTTTTTGATATTTCTTGTGCTGATATGGTCCAAGCTTTGGAAAGTGGTGCAAGAGCTGGAGTTGTCCCTGCTCTATTTGAAGCATTGGTTGATAAGACATGGCTTTTCAAGGTTGAGTCAAAGGCAAATCATAACCAAAGGTTTGAGCAATCATTTAGGGTTAGAAAGCTTTGCACCGATGCTGCTATCATCCAACAATTTAAAGAGAAGTGGGACAATGAAGAAGCTGCTGTTGGAAAAGCCATAAATGAACATGGTTCTCTGAGTACATTGGTAGGCAAAGGGAAAGATATGTTGGTTGGTGGATCTTCAAATGTTATGAATGAGGAATGTGAGATTTTGTCTTCAAGTGATGTCAAAGGAAAAGGGGTTTTTGTTGAGGCAAGTCAAGTTGGTGAGTTTACTCAAGATTTGATGAACAAATTTGCTGATGCTGTTGTGGATCTTGGTGAGGACAGTAGTCCCGTAATTGGTTCCACCAAATTTGTTTCTGATGTTGTTGTGGATCTTGGTGATGACAGTAGTCCCTTAAATGGTTTCACCAAATCTGTTTCTACTATGAGTGAAAAAACACTTGTGTCTGTTAAGAGTGATGAAGGGTCTACTTTACCTACCGTCAAGGGTCTACGCAAAAAATCAGTGGCTAAGAGAGTGTCACCTAAGAATGATGAAGGTGGTGAGGATGACAATGCTCCAATCAAGCTCTTGAAGAGGCCTATCAAGATTGAAAAAATATAA 1848 0.3777 MSLSVANGSEFSNISEINSDKAAWDVKVKIIRLWQVSDFNRTTLPFSIEMVLLDANGDRIHATVKKTLIYKFKDQIMEGKIYALQNVGVSNNGGAYRTTRHPYKMNFQFNTFVQRISNFDISKSPFHFVPISEIVGGSYDTDYLCDVMGVLTGVGQEREVTNQNGSTTKLNVIALEANGSKIQCTLFGNYVDKLNAFLGAGDCNNAVVIMQFAKAKNFQDKIHIQNCMNCSLLFFNSSCAESVAFKSSLAENVDTPSPLALTQIGCESRVEPIDEFLHNTRRITLQCLRDAGSEGYHVVAAPIKKVLNPDSFWYTACVCNKAVIPDSKMFYCEKCNKHVVRVFPRFCIKVRVMDNTDSAIFVIFDKDASSLFDISCADMVQALESGARAGVVPALFEALVDKTWLFKVESKANHNQRFEQSFRVRKLCTDAAIIQQFKEKWDNEEAAVGKAINEHGSLSTLVGKGKDMLVGGSSNVMNEECEILSSSDVKGKGVFVEASQVGEFTQDLMNKFADAVVDLGEDSSPVIGSTKFVSDVVVDLGDDSSPLNGFTKSVSTMSEKTLVSVKSDEGSTLPTVKGLRKKSVAKRVSPKNDEGGEDDNAPIKLLKRPIKIEKI 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03840 615 Gene3D - 9 115 IPR012340 -
Trre15g03840 615 Gene3D - 274 438 IPR012340 -
Trre15g03840 615 PANTHER OS03G0429900 PROTEIN 12 417 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre15g03840 615 SUPERFAMILY Nucleic acid-binding proteins 293 427 IPR012340 -
Trre15g03840 615 CDD RPA1_DBD_A_like 26 113 - -
Trre15g03840 615 MobiDBLite consensus disorder prediction 580 602 - -
Trre15g03840 615 Gene3D - 119 256 IPR012340 -
Trre15g03840 615 SUPERFAMILY Nucleic acid-binding proteins 126 252 IPR012340 -
Trre15g03840 615 SUPERFAMILY Nucleic acid-binding proteins 10 119 IPR012340 -
Trre15g03840 615 MobiDBLite consensus disorder prediction 586 602 - -
Trre15g03840 615 CDD RPA1_DBD_C 296 426 IPR047192 -
Trre15g03840 615 CDD RPA1_DBD_B_like 146 249 - -
Trre15g03840 615 Pfam Replication factor-A C terminal domain 300 429 IPR013955 -
Trre15g03840 615 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03840 Trre-Chr15 48040879 48043559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03840 17 425 Core DNA Replication Machinery Family AT5G08020 24.130 2.51e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03840 - - tpra:123915358 743.806