Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03828 ATGGATTGGGTAAGAGGAGAAACAATTGGTAGAGGAAGCTTTGCAACAGTTAATTTAGCTATACCCAAAGCAAAATCAAATTCCAATTCCACTCTTTTTACTTCTCCGACAGCCGTTAAAACATCTGAAGTATCAACCTCGTATTCTCTCAAAAATGAAAAACAAGTTCTTGATTTTCTAGGTTCACACAAACGAATCATTGGTTGTTTTGGAGATGATCACACATTCGAGAATGGCGAAAAGTATTACAATTTATTTCTCGAATATGCCTCCGCCGGTACACTCGCCGATCAAGTGAAATTCCACCGTGGCAGAATTCCAGAACAACACATTCGTCGTTACACAAGATCAATTGTTGAGGGTTTAAGCCATATTCATAGCAATGGATTTGTTCATTGTGATATAAAGCTTCAAAATATTCTAGTTTTCCACGACGGTGAAATTAAAATCGCTGATTTTGGTCTTGCGAAGAAAACAGGGGAAAAACAGAGGTTTGAATGCAGGGGAACTCCGTTGTTTATGTCACCGGAATTAGTGAACGGTGGCGAGAATGAGTCGCCGGCGGATATTTGGGCACTTGGGTGTGCAGTGGTGGAAATGGTAACCGGAAAACCAGCGTGGAATTTGGAGAAAGACTCGAATATGTGGTCGATGTTACGTCGAATTGGTGCCGGAGAAGAATCCCCGGTGATACCAGAAGAGTTATCGAAAGAGGGAAAAGATTTTATTGAGAAGTGTTTTGTGAATGATCCAAGAAAAAGATGGACGGCTGAGATGCTTTTCAATCATCCTTTTATTGAAGAAATGAAGAATGTTAATGAATCATCACCAAGAACTCACTTTGATTTCAATGATTGGGTTTCTAATGTTAGTGATTCCGTTCCGAATTCGCCCGAATCTGAAGAGTTTTGTCAATGGGATGTTAATTCTAGTTTTTGTCCCGCGGCAGATCGGCTCCGGCAGCTTGTGACGGTTGAAGGGCCGATTAATTGGTGGGAATCAGAGAGTTGGATTAGTGTTAGGTGA 1026 0.4103 MDWVRGETIGRGSFATVNLAIPKAKSNSNSTLFTSPTAVKTSEVSTSYSLKNEKQVLDFLGSHKRIIGCFGDDHTFENGEKYYNLFLEYASAGTLADQVKFHRGRIPEQHIRRYTRSIVEGLSHIHSNGFVHCDIKLQNILVFHDGEIKIADFGLAKKTGEKQRFECRGTPLFMSPELVNGGENESPADIWALGCAVVEMVTGKPAWNLEKDSNMWSMLRRIGAGEESPVIPEELSKEGKDFIEKCFVNDPRKRWTAEMLFNHPFIEEMKNVNESSPRTHFDFNDWVSNVSDSVPNSPESEEFCQWDVNSSFCPAADRLRQLVTVEGPINWWESESWISVR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03828 341 Pfam Protein kinase domain 5 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03828 341 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 295 - -
Trre15g03828 341 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Trre15g03828 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Trre15g03828 341 SUPERFAMILY Protein kinase-like (PK-like) 3 298 IPR011009 -
Trre15g03828 341 SMART serkin_6 3 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03828 341 CDD STKc_MAPKKK 2 266 - -
Trre15g03828 341 ProSitePatterns Protein kinases ATP-binding region signature. 9 40 IPR017441 GO:0005524
Trre15g03828 341 ProSiteProfiles Protein kinase domain profile. 3 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03828 Trre-Chr15 47915669 47916694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03828 1 341 MAP Kinase Kinase Kinase AT4G36950 51.821 5.36e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre15g03828 Pkinase 1.9e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03828 - - gmx:100782937 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03828 15 47915669 47916694 Trre15g03828 15 47915669 47916694 ECH
Trre9g00830 9 6428493 6429466 Trre15g03828 15 47915669 47916694 PCT